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Back to danifranco/biapy

Projects sharing features with BiaPy

16 open-source projects similar to danifranco/biapy, ranked by shared indexed features. Tags may describe platforms or build tools rather than the same primary purpose. Check each project’s use case, license, and deployment requirements before treating it as a replacement.

  • bactopia/bactopiabactopia avatar

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    A flexible pipeline for complete analysis of bacterial genomes

    Nextflow
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  • bodenmillergroup/imcworkflowB

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    CellProfiler/CellProfiler

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    An open-source application for biological image analysis

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  • cellprofiler/cellprofiler-analystC

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  • chapmanb/bcbio-nextgenchapmanb avatar

    chapmanb/bcbio-nextgen

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    Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

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  • fmalmeida/bacannotfmalmeida avatar

    fmalmeida/bacannot

    107View on GitHub↗

    Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.

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  • fmalmeida/ngs-preprocessfmalmeida avatar

    fmalmeida/ngs-preprocess

    36View on GitHub↗

    A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies

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  • labsyspharm/ashlarL

    labsyspharm/ashlar

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    labsyspharm/cylinter

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  • labsyspharm/mcmicroL

    labsyspharm/mcmicro

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    labsyspharm/quantification

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  • labsyspharm/scimapL

    labsyspharm/scimap

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  • pentalpha/r-peridotpentalpha avatar

    pentalpha/r-peridot

    7View on GitHub↗

    Software for intuitively doing Differential Gene Expression (DGE) analysis on Windows and GNU\Linux, based on R packages.

    Java
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  • pycroscopy/atomaipycroscopy avatar

    pycroscopy/atomai

    228View on GitHub↗

    AtomAI is a Pytorch-based package for deep and machine learning analysis of microscopy data that doesn't require any advanced knowledge of Python or machine learning. The intended audience is domain scientists with a basic understanding of how to use NumPy and Matplotlib. It was developed by…

    Python
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  • qupath/qupathqupath avatar

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    1,388View on GitHub↗

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    Javabioimage-analysisbioimage-informaticscell-analysis
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  • vanvalenlab/kiosk-consoleV

    vanvalenlab/kiosk-console

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