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An open-source application for biological image analysis
A flexible pipeline for complete analysis of bacterial genomes
AtomAI is a Pytorch-based package for deep and machine learning analysis of microscopy data that doesn't require any advanced knowledge of Python or machine learning. The intended audience is domain scientists with a basic understanding of how to use NumPy and Matplotlib. It was developed by…
The main features of pycroscopy/atomai are: Analysis Pipelines, General Tools.
Open-source alternatives to pycroscopy/atomai include: bodenmillergroup/imcworkflow. cellprofiler/cellprofiler — An open-source application for biological image analysis. cellprofiler/cellprofiler-analyst. chapmanb/bcbio-nextgen — Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis. danifranco/biapy. bactopia/bactopia — A flexible pipeline for complete analysis of bacterial genomes.