How this analysis was created: This summary and feature list are AI-generated from collected project material and can contain mistakes. Stars, license and language are imported from GitHub. Inclusion does not mean that we have tested or audited this project. Check the source documentation for any feature you depend on. Learn more on our About page.
AtomAI is a Pytorch-based package for deep and machine learning analysis of microscopy data that doesn't require any advanced knowledge of Python or machine learning. The intended audience is domain scientists with a basic understanding of how to use NumPy and Matplotlib. It was developed by…
The main features of pycroscopy/atomai are: Analysis Pipelines, General Tools.
Projects with overlapping indexed features include: bodenmillergroup/imcworkflow — Overview repository on IMC data analysis. cellprofiler/cellprofiler — An open-source application for biological image analysis. cellprofiler/cellprofiler-analyst — Open-source software for exploring and analyzing large, high-dimensional image-derived data. chapmanb/bcbio-nextgen — Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis. danifranco/biapy — Open source Python library for building bioimage analysis pipelines. bactopia/bactopia — A flexible pipeline for complete analysis of bacterial genomes.
An open-source application for biological image analysis
Open-source software for exploring and analyzing large, high-dimensional image-derived data.
A flexible pipeline for complete analysis of bacterial genomes
