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Back to seqware/seqware

Open-source alternatives to Seqware

9 open-source projects similar to seqware/seqware, ranked by how many features they have in common. Compare stars, activity and what each one does to find the best Seqware alternative.

  • broadinstitute/cromwellAvatar de broadinstitute

    broadinstitute/cromwell

    1,069Voir sur GitHub↗

    Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

    Scala
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  • broadinstitute/wdlAvatar de broadinstitute

    broadinstitute/wdl

    27Voir sur GitHub↗

    Workflow Description Language - Specification and Implementations

    Java
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  • cgat-developers/ruffusAvatar de cgat-developers

    cgat-developers/ruffus

    175Voir sur GitHub↗

    CGAT-ruffus is a lightweight python module for running computational pipelines

    Python
    Voir sur GitHub↗175
  • common-workflow-language/common-workflow-languageAvatar de common-workflow-language

    common-workflow-language/common-workflow-language

    1,480Voir sur GitHub↗

    Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊

    Common Workflow Language
    Voir sur GitHub↗1,480
  • insitro/redunAvatar de insitro

    insitro/redun

    591Voir sur GitHub↗

    Yet another redundant workflow engine

    Python
    Voir sur GitHub↗591

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nextflow-io/nextflowAvatar de nextflow-io

nextflow-io/nextflow

3,305Voir sur GitHub↗

Nextflow is a dataflow workflow engine and distributed computing framework used to build and execute data-intensive pipelines. It serves as a scientific workflow language that allows users to define reproducible data processing sequences, supporting any scripting language through shebang declarations. The system functions as a containerized pipeline orchestrator, utilizing container technologies to ensure software dependencies remain consistent across different environments. It decouples workflow logic from the underlying infrastructure, enabling the same pipeline to run on local machines, cl

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Voir sur GitHub↗3,305
  • pcingola/bigdatascriptAvatar de pcingola

    pcingola/BigDataScript

    92Voir sur GitHub↗

    BigDataScript: Scirpting language for big data

    Shell
    Voir sur GitHub↗92
  • scipipe/scipipeAvatar de scipipe

    scipipe/scipipe

    1,112Voir sur GitHub↗

    Robust, flexible and resource-efficient pipelines using Go and the commandline

    Go
    Voir sur GitHub↗1,112
  • ssadedin/bpipeAvatar de ssadedin

    ssadedin/bpipe

    242Voir sur GitHub↗

    Bpipe - a tool for running and managing bioinformatics pipelines

    Groovy
    Voir sur GitHub↗242