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Projects sharing features with Scanpy
30 open-source projects similar to scverse/scanpy, ranked by shared indexed features. Tags may describe platforms or build tools rather than the same primary purpose. Check each project’s use case, license, and deployment requirements before treating it as a replacement.
- k-dense-ai/scientific-agent-skills
K-Dense-AI/scientific-agent-skills
56,398View on GitHubThis project is a collection of specialized toolkits and an agent skill library designed to equip large language model agents with the capabilities to perform complex scientific research across biology, chemistry, medicine, and physics. It provides a structured framework of integration paths and tools that allow agents to execute multi-step research workflows. The system is distinguished by its domain-specific toolsets, including a bioinformatics toolkit for genomic and single-cell analysis, a cheminformatics toolset for drug-target binding and lead compound optimization, and a multi-omics an
Python - k-dense-ai/claude-scientific-skills
K-Dense-AI/claude-scientific-skills
8,907View on GitHubThis project is a scientific agent framework and workflow orchestrator designed to extend large language models with specialized tools for genomic, chemical, and biological research. It provides a system for planning research hypotheses and executing automated workflows by integrating scientific databases with dynamic code execution. The framework includes a cheminformatics modeling suite for predicting molecular bioactivity and performing virtual screening, alongside a bioinformatics analysis toolkit for processing genomic sequences and single-cell data. It also features an academic document
Pythonai-scientistbioinformaticschemoinformatics - nmwsharp/geometry-central
nmwsharp/geometry-central
1,320View on GitHubGeometry-central is a C++ framework designed for 3D geometry processing, surface analysis, and numerical computation. It provides a foundational toolkit for performing discrete differential geometry operations on manifold surface meshes, enabling the analysis and manipulation of complex 3D structures. The library distinguishes itself through its support for intrinsic triangulation processing, which allows for the execution of geometric algorithms independently of vertex positions to maintain stability under deformation. It utilizes a half-edge mesh representation to facilitate constant-time t
C++
