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Back to pcingola/bigdatascript

Open-source alternatives to BigDataScript

9 open-source projects similar to pcingola/bigdatascript, ranked by how many features they have in common. Compare stars, activity and what each one does to find the best BigDataScript alternative.

  • broadinstitute/cromwellbroadinstitute avatar

    broadinstitute/cromwell

    1,069View on GitHub↗

    Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

    Scala
    View on GitHub↗1,069
  • broadinstitute/wdlbroadinstitute avatar

    broadinstitute/wdl

    27View on GitHub↗

    Workflow Description Language - Specification and Implementations

    Java
    View on GitHub↗27
  • cgat-developers/ruffuscgat-developers avatar

    cgat-developers/ruffus

    175View on GitHub↗

    CGAT-ruffus is a lightweight python module for running computational pipelines

    Python
    View on GitHub↗175
  • common-workflow-language/common-workflow-languagecommon-workflow-language avatar

    common-workflow-language/common-workflow-language

    1,480View on GitHub↗

    Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊

    Common Workflow Language
    View on GitHub↗1,480
  • insitro/reduninsitro avatar

    insitro/redun

    591View on GitHub↗

    Yet another redundant workflow engine

    Python
    View on GitHub↗591

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nextflow-io/nextflownextflow-io avatar

nextflow-io/nextflow

3,305View on GitHub↗

Nextflow is a dataflow workflow engine and distributed computing framework used to build and execute data-intensive pipelines. It serves as a scientific workflow language that allows users to define reproducible data processing sequences, supporting any scripting language through shebang declarations. The system functions as a containerized pipeline orchestrator, utilizing container technologies to ensure software dependencies remain consistent across different environments. It decouples workflow logic from the underlying infrastructure, enabling the same pipeline to run on local machines, cl

Groovyawsbioinformaticscloud
View on GitHub↗3,305
  • scipipe/scipipescipipe avatar

    scipipe/scipipe

    1,112View on GitHub↗

    Robust, flexible and resource-efficient pipelines using Go and the commandline

    Go
    View on GitHub↗1,112
  • seqware/seqwareSeqWare avatar

    SeqWare/seqware

    30View on GitHub↗

    This is the SeqWare Project's main repo.

    Java
    View on GitHub↗30
  • ssadedin/bpipessadedin avatar

    ssadedin/bpipe

    242View on GitHub↗

    Bpipe - a tool for running and managing bioinformatics pipelines

    Groovy
    View on GitHub↗242