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Projects sharing features with Bioruby

30 open-source projects similar to bioruby/bioruby, ranked by shared indexed features. Tags may describe platforms or build tools rather than the same primary purpose. Check each project’s use case, license, and deployment requirements before treating it as a replacement.

  • morvanzhou/tutorialsMorvanZhou avatar

    MorvanZhou/tutorials

    12,952View on GitHub↗

    This repository is a comprehensive collection of instructional guides and practical examples for Python development, focusing on machine learning, data science, and web scraping. It provides implementations for neural networks, reinforcement learning algorithms, and deep learning architectures using PyTorch, alongside detailed manuals for scientific computing and data visualization. The project distinguishes itself by offering specialized tutorials on concurrent programming to optimize CPU performance and guides for setting up Linux development environments. It covers the implementation of ad

    Pythonmachine-learningmultiprocessingneural-network
    View on GitHub↗12,952
  • lijin-thu/notes-pythonlijin-THU avatar

    lijin-THU/notes-python

    7,132View on GitHub↗

    This project is a collection of educational notes and tutorials focused on Python programming, scientific computing, and data analysis. It serves as a reference for learning language basics, advanced techniques, and object-oriented design. The materials include implementation guides for building linear, logistic, and convolutional neural networks using symbolic graph frameworks. It also provides instruction on manipulating and visualizing structured data frames and performing complex mathematical operations through numerical libraries. The repository includes a system for converting interact

    Jupyter Notebookanacondamatplotlibnumpy
    View on GitHub↗7,132
  • electricitymaps/electricitymaps-contribelectricitymaps avatar

    electricitymaps/electricitymaps-contrib

    4,008View on GitHub↗

    This project provides a suite of interfaces and tools for accessing electricity carbon intensity and production metrics. It includes an API for real-time and historical data, a geographic power data map for visualizing regional carbon intensity and renewable energy percentages, and a system for extracting datasets required for standardized greenhouse gas emissions reporting. The project features an interactive API sandbox that allows users to test requests and inspect data responses without writing code. It also includes mechanisms for institutional email verification to manage access to hist

    Pythonappclimate-changedata-visualization
    View on GitHub↗4,008

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  • patchy631/machine-learningpatchy631 avatar

    patchy631/machine-learning

    1,540View on GitHub↗

    This repository serves as an educational collection of interactive notebooks and code examples designed to demonstrate fundamental machine learning and deep learning concepts. It provides a structured environment for exploring data science workflows, ranging from basic numerical computing and statistical analysis to the construction of complex neural network architectures. The project distinguishes itself through a focus on hands-on experimentation, offering practical implementations for tasks such as computer vision, natural language processing, and statistical simulation. Users can engage w

    Jupyter Notebook
    View on GitHub↗1,540
  • gto76/python-cheatsheetgto76 avatar

    gto76/python-cheatsheet

    38,499View on GitHub↗

    This project is a comprehensive technical reference and programming cheatsheet for the Python language. It serves as a curated catalog of language features, syntax patterns, and standard library functions designed to help developers identify and apply correct coding patterns. The documentation covers a broad range of functional areas, including language fundamentals such as object-oriented structuring, functional logic, and list comprehensions. It also provides guidance on utilizing the standard library for data analysis, file management, networking, and concurrent execution. The reference e

    Pythoncheatsheetpythonpython-cheatsheet
    View on GitHub↗38,499
  • morvanzhou/tensorflow-tutorialMorvanZhou avatar

    MorvanZhou/Tensorflow-Tutorial

    4,334View on GitHub↗

    This project is a collection of educational resources and reference implementations for neural network development using TensorFlow. It serves as a comprehensive learning course, machine learning curriculum, and practical implementation guide for building deep learning architectures. The codebase provides instructional materials and examples covering a wide range of model types, including convolutional neural networks for image classification, recurrent networks and long short-term memory cells for sequential data, and autoencoders for generative modeling. It also includes implementations for

    Pythonautoencoderclassificationcnn
    View on GitHub↗4,334
  • basekick-labs/arcBasekick-Labs avatar

    Basekick-Labs/arc

    615View on GitHub↗

    High-performance time-series database built on DuckDB. Go implementation.

    Go
    View on GitHub↗615
  • aurora-opensource/auaurora-opensource avatar

    aurora-opensource/au

    425View on GitHub↗

    A C++14-compatible physical units library with no dependencies and a single-file delivery option. Emphasis on safety, accessibility, performance, and developer experience.

    C++bazelcompile-timecpp
    View on GitHub↗425
  • giovineitalia/gadfly.jlGiovineItalia avatar

    GiovineItalia/Gadfly.jl

    1,926View on GitHub↗

    Crafty statistical graphics for Julia.

    Julia
    View on GitHub↗1,926
  • axiomhq/mcp-server-axiomaxiomhq avatar

    axiomhq/mcp-server-axiom

    61View on GitHub↗

    Axiom Model Context Protocol Server

    Go
    View on GitHub↗61
  • azure/azure-tdsp-utilitiesAzure avatar

    Azure/Azure-TDSP-Utilities

    378View on GitHub↗

    Utilities and scripts developed as part of Microsoft's Team Data Science Process for productive data science

    HTML
    View on GitHub↗378
  • chronulusai/chronulus-mcpChronulusAI avatar

    ChronulusAI/chronulus-mcp

    111View on GitHub↗

    MCP Server for Chronulus AI Forecasting and Prediction Agents

    Python
    View on GitHub↗111
  • claygod/pihexC

    claygod/PiHex

    0View on GitHub↗
    View on GitHub↗0
  • clugen/clugenrclugen avatar

    clugen/clugenr

    5View on GitHub↗

    Multidimensional cluster generation in R

    R
    View on GitHub↗5
  • bigdatagenomics/adambigdatagenomics avatar

    bigdatagenomics/adam

    1,053View on GitHub↗

    ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.

    Scala
    View on GitHub↗1,053
  • alixaxel/pagerankA

    alixaxel/pagerank

    0View on GitHub↗
    View on GitHub↗0
  • ddemidov/amgclddemidov avatar

    ddemidov/amgcl

    865View on GitHub↗

    C++ library for solving large sparse linear systems with algebraic multigrid method

    C++amgc-plus-pluscpp
    View on GitHub↗865
  • davidbelicza/textrankD

    DavidBelicza/TextRank

    0View on GitHub↗
    View on GitHub↗0
  • delano/scruffydelano avatar

    delano/scruffy

    31View on GitHub↗

    An unofficial fork of the Ruby graphing library with sexy defaults for hi-res charts. (NOT MAINTAINED)

    Ruby
    View on GitHub↗31
  • dlangscience/dstatsDlangScience avatar

    DlangScience/dstats

    26View on GitHub↗

    dstats

    D
    View on GitHub↗26
  • dlangscience/scidDlangScience avatar

    DlangScience/scid

    92View on GitHub↗

    Scientific library for the D programming language

    D
    View on GitHub↗92
  • bioscala/bioscalabioscala avatar

    bioscala/bioscala

    115View on GitHub↗

    Bioinformatics for the Scala programming language

    Scala
    View on GitHub↗115
  • cdslaborg/paramontecdslaborg avatar

    cdslaborg/paramonte

    305View on GitHub↗

    ParaMonte: Parallel Monte Carlo and Machine Learning Library for Python, MATLAB, Fortran, C++, C.

    Fortran
    View on GitHub↗305
  • biddata/bidmatBIDData avatar

    BIDData/BIDMat

    269View on GitHub↗

    A CPU and GPU-accelerated matrix library for data mining

    Scala
    View on GitHub↗269
  • erdos-graph-framework/erdosErdos-Graph-Framework avatar

    Erdos-Graph-Framework/Erdos

    128View on GitHub↗

    Modular and modern graph-theory algorithms framework in Java

    Java
    View on GitHub↗128
  • finos/perspectivefinos avatar

    finos/perspective

    10,967View on GitHub↗

    Perspective is a columnar data analytics library and streaming data visualization engine. It provides an interactive data grid component and notebook analytics widgets designed for processing high-volume data and rendering interactive charts and grids. The system utilizes a high-performance query engine to enable real-time data analysis and streaming dataset visualization. It supports the creation of customizable dashboards and reports that update automatically as new data arrives without requiring full dataset reloads. The project covers large-scale dataset analytics through a schema-driven

    C++
    View on GitHub↗10,967
  • flowcore-io/mcp-flowcore-platformflowcore-io avatar

    flowcore-io/mcp-flowcore-platform

    9View on GitHub↗

    MCP server for managing and interacting with Flowcore Platform

    TypeScript
    View on GitHub↗9
  • flowingmedia/timeflowFlowingMedia avatar

    FlowingMedia/TimeFlow

    457View on GitHub↗

    Timeline visualization application

    Java
    View on GitHub↗457
  • geomscale/volestiGeomScale avatar

    GeomScale/volesti

    186View on GitHub↗

    Practical volume computation and sampling in high dimensions

    C++cranfinancegeometry
    View on GitHub↗186
  • cpmech/goslcpmech avatar

    cpmech/gosl

    1,876View on GitHub↗

    Linear algebra, eigenvalues, FFT, Bessel, elliptic, orthogonal polys, geometry, NURBS, numerical quadrature, 3D transfinite interpolation, random numbers, Mersenne twister, probability distributions, optimisation, differential equations.

    Gocomputational-geometrydifferential-equationseigenvalues
    View on GitHub↗1,876