10 dépôts
Awesome GitHub RepositoriesWorkflow Managers
Systems for defining, executing, and scaling complex analysis pipelines.
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Awesome Workflow Managers GitHub Repositories
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- nextflow-io/nextflow
nextflow-io/nextflow
3,305Voir sur GitHubNextflow is a dataflow workflow engine and distributed computing framework used to build and execute data-intensive pipelines. It serves as a scientific workflow language that allows users to define reproducible data processing sequences, supporting any scripting language through shebang declarations. The system functions as a containerized pipeline orchestrator, utilizing container technologies to ensure software dependencies remain consistent across different environments. It decouples workflow logic from the underlying infrastructure, enabling the same pipeline to run on local machines, cl
DSL for writing parallel and scalable pipelines.
Groovyawsbioinformaticscloud - common-workflow-language/common-workflow-language
common-workflow-language/common-workflow-language
1,480Voir sur GitHubRepository for the CWL standards. Use https://cwl.discourse.group/ for support 😊
Standard for portable and scalable analysis workflows.
Common Workflow Language - scipipe/scipipe
scipipe/scipipe
1,112Voir sur GitHubRobust, flexible and resource-efficient pipelines using Go and the commandline
Go-based workflow library for complex pipeline constructs.
Go - broadinstitute/cromwell
broadinstitute/cromwell
1,069Voir sur GitHubScientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
Workflow management system for scientific data analysis.
Scala - insitro/redun
insitro/redun
Yet another redundant workflow engine
Python-based manager for complex workflows.
Python - ssadedin/bpipe
ssadedin/bpipe
Bpipe - a tool for running and managing bioinformatics pipelines
Language for defining and linking pipeline stages.
Groovy - cgat-developers/ruffus
cgat-developers/ruffus
CGAT-ruffus is a lightweight python module for running computational pipelines
Python library for building computational pipelines.
Python - pcingola/bigdatascript
pcingola/BigDataScript
BigDataScript: Scirpting language for big data
Scripting language for managing big data pipelines.
Shell - seqware/seqware
SeqWare/seqware
This is the SeqWare Project's main repo.
Hadoop-based system for genomics analysis in the cloud.
Java - broadinstitute/wdl
broadinstitute/wdl
Workflow Description Language - Specification and Implementations
Workflow description language standard for genomics.
Java
