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Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.
Fast spatial deconvolution via leverage-score sketching — scales to million-spot datasets while preserving rare cell type signals.
The main features of cafferychen777/flashdeconv are: Machine Learning and Analytics, Spatial Transcriptomics.
Open-source alternatives to cafferychen777/flashdeconv include: bcbio/bcbio-nextgen — Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis. bigdatagenomics/adam — ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache… broadinstitute/tangram. cafferychen777/chatspatial — MCP server for spatial transcriptomics analysis through natural language interfaces. chansigit/torchgw. bayraktarlab/cell2location.