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ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.
Fast spatial deconvolution via leverage-score sketching — scales to million-spot datasets while preserving rare cell type signals.
Oryx 2: Lambda architecture on Apache Spark, Apache Kafka for real-time large scale machine learning
MONAI is a PyTorch-based deep learning framework and library specifically designed for healthcare imaging. It provides a suite of domain-specific neural network architectures, specialized loss functions, and preprocessing pipelines tailored for analyzing multi-dimensional medical data. The project distinguishes itself through a decentralized federated learning system that allows models to learn from datasets across multiple institutions without exchanging raw patient images. It also features AI-assisted medical image annotation tools and a standardized model bundling system to ensure consiste
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
The main features of bcbio/bcbio-nextgen are: Machine Learning and Analytics.
Open-source alternatives to bcbio/bcbio-nextgen include: bigdatagenomics/adam — ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache… cafferychen777/flashdeconv — Fast spatial deconvolution via leverage-score sketching — scales to million-spot datasets while preserving rare cell… oryxproject/oryx — Oryx 2: Lambda architecture on Apache Spark, Apache Kafka for real-time large scale machine learning. project-monai/monai — MONAI is a PyTorch-based deep learning framework and library specifically designed for healthcare imaging. It provides… revolutionanalytics/rhadoop — RHadoop. shibing624/medicalgpt — MedicalGPT is an open-source framework for fine-tuning large language models, with a dedicated focus on adapting…