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Mapping protein interactions and biological pathways using structured knowledge graphs.
Distinct from Knowledge Graph Builders: Focuses on biological pathway and protein interaction mapping rather than general knowledge graph construction from logs.
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This project is a scientific agent framework and workflow orchestrator designed to extend large language models with specialized tools for genomic, chemical, and biological research. It provides a system for planning research hypotheses and executing automated workflows by integrating scientific databases with dynamic code execution. The framework includes a cheminformatics modeling suite for predicting molecular bioactivity and performing virtual screening, alongside a bioinformatics analysis toolkit for processing genomic sequences and single-cell data. It also features an academic document
Maps protein interactions and biological pathways by linking gene lists to structured scientific databases.