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Back to seqware/seqware

Open-source alternatives to Seqware

9 open-source projects similar to seqware/seqware, ranked by how many features they have in common. Compare stars, activity and what each one does to find the best Seqware alternative.

  • broadinstitute/cromwellAvatar broadinstitute

    broadinstitute/cromwell

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    Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

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    CGAT-ruffus is a lightweight python module for running computational pipelines

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  • common-workflow-language/common-workflow-languageAvatar common-workflow-language

    common-workflow-language/common-workflow-language

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    Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊

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  • insitro/redunAvatar insitro

    insitro/redun

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    Yet another redundant workflow engine

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nextflow-io/nextflowAvatar nextflow-io

nextflow-io/nextflow

3,305Vezi pe GitHub↗

Nextflow is a dataflow workflow engine and distributed computing framework used to build and execute data-intensive pipelines. It serves as a scientific workflow language that allows users to define reproducible data processing sequences, supporting any scripting language through shebang declarations. The system functions as a containerized pipeline orchestrator, utilizing container technologies to ensure software dependencies remain consistent across different environments. It decouples workflow logic from the underlying infrastructure, enabling the same pipeline to run on local machines, cl

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  • pcingola/bigdatascriptAvatar pcingola

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  • scipipe/scipipeAvatar scipipe

    scipipe/scipipe

    1,112Vezi pe GitHub↗

    Robust, flexible and resource-efficient pipelines using Go and the commandline

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  • ssadedin/bpipeAvatar ssadedin

    ssadedin/bpipe

    242Vezi pe GitHub↗

    Bpipe - a tool for running and managing bioinformatics pipelines

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