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Back to snakemake/snakemake

Open-source alternatives to Snakemake

30 open-source projects similar to snakemake/snakemake, ranked by how many features they have in common. Compare stars, activity and what each one does to find the best Snakemake alternative.

  • argoproj/argo-workflowsargoproj avatar

    argoproj/argo-workflows

    16,466View on GitHub↗

    Argo Workflows is a container-native workflow engine that functions as a Kubernetes custom resource controller. It orchestrates complex sequences of containerized tasks by executing them as directed acyclic graphs, allowing for dependency management and parallel processing within a cluster. The system extends the native Kubernetes control plane to manage the full lifecycle of automated processes, from initial triggering to final resource cleanup. The platform distinguishes itself through its controller-pattern reconciliation, which continuously monitors workflow states to align them with desi

    Goairflowargoargo-workflows
    View on GitHub↗16,466
  • huginn/huginnhuginn avatar

    huginn/huginn

    49,480View on GitHub↗

    Huginn is a self-hosted automation platform that functions as an event-driven workflow engine. It allows users to build autonomous agents that monitor web services, scrape data, and execute complex tasks by propagating events through a directed graph. By running on your own server infrastructure, it provides a private environment for orchestrating workflows without relying on third-party automation services. The platform distinguishes itself through a modular, plugin-based architecture that enables the development of custom agents to handle specific data processing needs. Each agent maintains

    Rubyagentautomationfeed
    View on GitHub↗49,480
  • netflix/metaflowNetflix avatar

    Netflix/metaflow

    9,764View on GitHub↗

    Metaflow is a Python machine learning framework and MLOps workflow orchestrator designed to manage the lifecycle of data pipelines from local prototyping to production. It serves as a distributed compute manager and an experiment tracking system, enabling the creation of reproducible pipelines that transition between development and high-availability production environments. The framework distinguishes itself through an integrated checkpointing system that automatically persists intermediate data artifacts to remote storage, allowing failed runs to be resumed from the last successful step. It

    Pythonagentsaiaws
    View on GitHub↗9,764

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  • nextflow-io/nextflownextflow-io avatar

    nextflow-io/nextflow

    3,305View on GitHub↗

    Nextflow is a dataflow workflow engine and distributed computing framework used to build and execute data-intensive pipelines. It serves as a scientific workflow language that allows users to define reproducible data processing sequences, supporting any scripting language through shebang declarations. The system functions as a containerized pipeline orchestrator, utilizing container technologies to ensure software dependencies remain consistent across different environments. It decouples workflow logic from the underlying infrastructure, enabling the same pipeline to run on local machines, cl

    Groovyawsbioinformaticscloud
    View on GitHub↗3,305
  • couler-proj/coulercouler-proj avatar

    couler-proj/couler

    944View on GitHub↗

    Unified Interface for Constructing and Managing Workflows on different workflow engines, such as Argo Workflows, Tekton Pipelines, and Apache Airflow.

    Python
    View on GitHub↗944
  • apache/oozieapache avatar

    apache/oozie

    729View on GitHub↗

    Mirror of Apache Oozie

    Java
    View on GitHub↗729
  • dagster-io/dagsterdagster-io avatar

    dagster-io/dagster

    14,974View on GitHub↗

    Dagster is a data orchestration platform designed to manage the entire lifecycle of data assets through declarative modeling and version-controlled code. It functions as a workflow engine that treats data assets as first-class primitives, allowing teams to define, schedule, and monitor complex pipelines while maintaining clear visibility into lineage, dependencies, and data quality. The platform distinguishes itself by using a code-as-configuration framework that enables standard software engineering practices, such as unit testing and local mocking, to be applied directly to data workflows.

    Pythonanalyticsdagsterdata-engineering
    View on GitHub↗14,974
  • n8n-io/n8nn8n-io avatar

    n8n-io/n8n

    192,772View on GitHub↗

    n8n is a workflow automation platform that combines a visual interface with code-based extensibility to design, orchestrate, and manage automated processes. It provides a comprehensive suite of tools for data transformation, filtering, and storage, allowing users to build complex logic through conditional branching, looping, and sub-workflow execution. The platform supports both pre-built integration nodes and custom code execution in JavaScript or Python, enabling connectivity with a wide range of external services and APIs. The platform includes a suite of generative AI capabilities, such a

    TypeScriptaiapisautomation
    View on GitHub↗192,772
  • activepieces/activepiecesactivepieces avatar

    activepieces/activepieces

    20,887View on GitHub↗

    Activepieces is an open-source, self-hosted workflow automation platform designed to connect third-party applications through modular triggers and actions. It provides a low-code integration framework that allows users to build, manage, and execute complex business logic sequences within isolated, sandboxed environments. The platform distinguishes itself through its focus on embeddability and enterprise-grade security. It features an embedded automation builder that can be integrated into external applications via iframes, supported by comprehensive identity and access management tools such a

    TypeScriptai-agentai-agent-toolsai-agents
    View on GitHub↗20,887
  • prefecthq/prefectPrefectHQ avatar

    PrefectHQ/prefect

    21,640View on GitHub↗

    Prefect is a workflow orchestration platform designed to define, schedule, and monitor complex data pipelines as Python code. It functions as a container-native engine that wraps individual tasks in isolated environments, ensuring consistent dependencies and resource allocation across diverse infrastructure. By utilizing a state-machine-based orchestration model, the system tracks execution progress through discrete transitions and persistent event logs to maintain reliable and observable task processing. The platform distinguishes itself through a decoupled worker-API architecture, which sep

    Pythonautomationdatadata-engineering
    View on GitHub↗21,640
  • akfamily/akshareakfamily avatar

    akfamily/akshare

    16,358View on GitHub↗

    This project is a Python library designed for the programmatic retrieval and analysis of diverse financial datasets. It functions as a comprehensive toolkit for quantitative research, providing a unified interface to fetch historical and real-time market data across asset classes including equities, futures, bonds, cryptocurrencies, and foreign exchange. By abstracting complex network requests into simple, parameter-driven functions, it enables users to integrate financial data into research workflows and automated trading systems. The library distinguishes itself through its scraper-based ag

    Pythonacademicakshareasset-pricing
    View on GitHub↗16,358
  • apache/incubator-airflowapache avatar

    apache/incubator-airflow

    45,840View on GitHub↗

    This project is a Python workflow orchestration platform and programmatic data pipeline engine used to author, schedule, and monitor complex data pipelines. It functions as a directed acyclic graph manager and scheduler, allowing users to define data movement and transformation tasks as code to ensure precise execution order and maintainability. The platform distinguishes itself by treating workflows as code, enabling pipelines to be versioned and tested through a standard programming language. It utilizes a system of extensible operators to encapsulate integration logic and employs a templat

    Python
    View on GitHub↗45,840
  • apache/incubator-pulsarapache avatar

    apache/incubator-pulsar

    15,270View on GitHub↗

    Apache Pulsar is a cloud-native message queue and distributed publish-subscribe messaging system. It serves as a multi-tenant event streaming platform designed to route data streams for asynchronous communication between producers and consumers. The system distinguishes itself through geo-replication, synchronizing data across multiple geographic regions to ensure high availability and low latency. It implements a multi-tenant architecture that provides isolation and resource management for millions of independent topics. The platform covers high-throughput data streaming and event-driven da

    Java
    View on GitHub↗15,270
  • apache/kafkaapache avatar

    apache/kafka

    32,846View on GitHub↗

    Kafka is a distributed event streaming platform designed for capturing, storing, and processing real-time data streams across interconnected nodes. It functions as a distributed commit log, providing a fault-tolerant storage mechanism that records state changes sequentially to ensure data consistency and durability across distributed environments. The platform distinguishes itself through a partitioned commit log architecture that enables horizontal scaling and parallel processing of data streams. It integrates a stream processing engine for continuous transformations and aggregations, while

    Javakafkascala
    View on GitHub↗32,846
  • azkaban/azkabanazkaban avatar

    azkaban/azkaban

    4,504View on GitHub↗

    Azkaban is a distributed workflow manager and DAG-based job orchestrator designed as an enterprise batch processor. It serves as a Java-based workflow engine that schedules and executes complex job sequences across a cluster of executor servers, with specific functionality for managing big data workloads on Hadoop clusters. The system distinguishes itself through a distributed executor model that coordinates state via a shared database to ensure high availability. It employs a plugin-based architecture that allows for custom job types and system functionality extensions, including the ability

    Java
    View on GitHub↗4,504
  • apache/flumeapache avatar

    apache/flume

    2,561View on GitHub↗

    Apache Flume is a distributed, reliable, and available service for efficiently collecting, aggregating, and moving large amounts of log-like data

    Java
    View on GitHub↗2,561
  • aiidateam/aiida-coreaiidateam avatar

    aiidateam/aiida-core

    570View on GitHub↗

    The official repository for the AiiDA code

    Python
    View on GitHub↗570
  • apache/dolphinschedulerapache avatar

    apache/dolphinscheduler

    14,329View on GitHub↗

    DolphinScheduler is a distributed workflow orchestrator designed to manage and automate complex data processing pipelines. It functions as a data pipeline scheduler that coordinates multi-step tasks across distributed environments, ensuring reliable execution through defined dependencies and sequences. The platform utilizes a directed acyclic graph model to represent workflows, allowing users to define task relationships via a visual interface. It employs a master-worker architecture supported by a pluggable task plugin system, which enables the dynamic extension of task types without requiri

    Javaairflowazkabancloud-native
    View on GitHub↗14,329
  • assemblerflow/assemblerflowA

    assemblerflow/assemblerflow

    0View on GitHub↗
    View on GitHub↗0
  • arvados/arvadosarvados avatar

    arvados/arvados

    418View on GitHub↗

    An open source platform for managing and analyzing biomedical big data

    Go
    View on GitHub↗418
  • assemblerflow/flowcraftA

    assemblerflow/flowcraft

    0View on GitHub↗
    View on GitHub↗0
  • automq/automqAutoMQ avatar

    AutoMQ/automq

    10,027View on GitHub↗

    AutoMQ is a cloud-native streaming platform and Apache Kafka distribution that implements a decoupled compute and storage architecture. It functions as an S3-backed message queue, using object storage as the primary log repository to eliminate dependencies on local disks. The platform utilizes a stateless broker architecture to enable dynamic compute scaling and automated partition balancing. This design allows the system to adjust the number of brokers in seconds and distribute network traffic without requiring manual data migration or partition reassignment. The system provides multi-avail

    Java
    View on GitHub↗10,027
  • apache/beamapache avatar

    apache/beam

    8,612View on GitHub↗

    Apache Beam is a distributed data pipeline framework and unified data processing model designed to handle both bounded batch data and unbounded real-time streams. It provides a system for building scalable, data-parallel workflows that operate across compute clusters using a single programming model. The framework utilizes a cross-runner pipeline abstraction that decouples the data processing logic from the underlying execution backend, allowing the same pipeline to run on different distributed compute engines. It supports multi-language pipeline development by translating high-level code fro

    Java
    View on GitHub↗8,612
  • brigadecore/brigadebrigadecore avatar

    brigadecore/brigade

    2,412View on GitHub↗

    Event-driven scripting for Kubernetes

    Go
    View on GitHub↗2,412
  • broadinstitute/cromwellbroadinstitute avatar

    broadinstitute/cromwell

    1,069View on GitHub↗

    Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

    Scala
    View on GitHub↗1,069
  • bruin-data/bruinbruin-data avatar

    bruin-data/bruin

    1,620View on GitHub↗

    Build data pipelines with SQL and Python, ingest data from different sources, add quality checks, and build end-to-end flows.

    Goanalyticsbigquerydata-analysis
    View on GitHub↗1,620
  • bruin-data/ingestrbruin-data avatar

    bruin-data/ingestr

    3,714View on GitHub↗

    ingestr is a command-line tool for copying and syncing data between different database engines and third-party platforms without writing custom code. It functions as an ETL pipeline utility that extracts data from diverse sources and loads it into destinations. The tool features a schema-agnostic data loader that maps source fields to destination columns dynamically, removing the need for predefined static table definitions. It also operates as an incremental data synchronizer, updating destination tables by appending new records or merging changes to maintain current datasets. The system pr

    Go
    View on GitHub↗3,714
  • bytechefhq/bytechefbytechefhq avatar

    bytechefhq/bytechef

    775View on GitHub↗

    Open-source platform that unifies AI agent orchestration and workflow automation — autonomy and precision in one platform.

    Java
    View on GitHub↗775
  • camunda/camunda-bpm-platformcamunda avatar

    camunda/camunda-bpm-platform

    4,269View on GitHub↗

    Camunda is a business process automation platform and orchestration tool used to model, deploy, and monitor automated workflows and human-centric tasks. It features a BPMN workflow engine for executing processes based on the BPMN 2.0 standard and a DMN decision engine for automating business logic and rule evaluation. The platform is designed for flexibility through an embedded workflow library that allows the engine to be integrated directly into custom applications. It supports multi-tenant workflow management, enabling the secure separation of process definitions and instance data for mult

    Java
    View on GitHub↗4,269
  • agnostiqhq/covalentAgnostiqHQ avatar

    AgnostiqHQ/covalent

    861View on GitHub↗

    Pythonic tool for orchestrating machine-learning/high performance/quantum-computing workflows in heterogeneous compute environments.

    Python
    View on GitHub↗861