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openvax avatar

openvax/pyensembl

0
View on GitHub↗
401 stars·74 forks·Python·Apache-2.0·19 views

Pyensembl

Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl

Features

  • Python Bioinformatics Modules - Pythonic access to the Ensembl database.

Star history

Star history chart for openvax/pyensemblStar history chart for openvax/pyensembl

How this analysis was created: This summary and feature list are AI-generated from collected project material and can contain mistakes. Stars, license and language are imported from GitHub. Inclusion does not mean that we have tested or audited this project. Check the source documentation for any feature you depend on. Learn more on our About page.

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Frequently asked questions

What does openvax/pyensembl do?

Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl

What are the main features of openvax/pyensembl?

The main features of openvax/pyensembl are: Python Bioinformatics Modules.

Which projects share features with openvax/pyensembl?

Projects with overlapping indexed features include: arq5x/cyvcf — A fast Python library for VCF files leveraging Cython for speed. biodatageeks/polars-bio — Blazing-Fast Bioinformatic Operations on Python DataFrames. brentp/cruzdb — python access to UCSC genomes database. brentp/cyvcf2 — cython + htslib == fast VCF and BCF processing. cokelaer/bioservices — Access to Biological Web Services from Python. daler/pybedtools — Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic").

Projects sharing features with Pyensembl

These projects share indexed features with Pyensembl. Shared tags can include platform or build tooling; verify the primary use case before treating a result as a replacement.
  • biodatageeks/polars-biobiodatageeks avatar

    biodatageeks/polars-bio

    168View on GitHub↗

    Blazing-Fast Bioinformatic Operations on Python DataFrames

    Python
    View on GitHub↗168
  • brentp/cruzdbbrentp avatar

    brentp/cruzdb

    137View on GitHub↗

    python access to UCSC genomes database

    Python
    View on GitHub↗137
  • brentp/cyvcf2brentp avatar

    brentp/cyvcf2

    445View on GitHub↗

    cython htslib == fast VCF and BCF processing

    Cython
    View on GitHub↗445
  • arq5x/cyvcfarq5x avatar

    arq5x/cyvcf

    53View on GitHub↗

    A fast Python library for VCF files leveraging Cython for speed.

    Python
    View on GitHub↗53
Compare all 10 related projects→