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arq5x avatar

arq5x/cyvcf

0
View on GitHub↗
53 stars·14 forks·Python·MIT·6 views

Cyvcf

A fast Python library for VCF files leveraging Cython for speed.

Features

  • Python Bioinformatics Modules - Cython-based VCF parser for improved speed.

Star history

Star history chart for arq5x/cyvcfStar history chart for arq5x/cyvcf

How this analysis was created: This summary and feature list are AI-generated from collected project material and can contain mistakes. Stars, license and language are imported from GitHub. Inclusion does not mean that we have tested or audited this project. Check the source documentation for any feature you depend on. Learn more on our About page.

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Projects sharing features with Cyvcf

These projects share indexed features with Cyvcf. Shared tags can include platform or build tooling; verify the primary use case before treating a result as a replacement.
  • brentp/cruzdbbrentp avatar

    brentp/cruzdb

    137View on GitHub↗

    python access to UCSC genomes database

    Python
    View on GitHub↗137
  • brentp/cyvcf2brentp avatar

    brentp/cyvcf2

    445View on GitHub↗

    cython htslib == fast VCF and BCF processing

    Cython
    View on GitHub↗445
  • cokelaer/bioservicescokelaer avatar

    cokelaer/bioservices

    338View on GitHub↗

    Access to Biological Web Services from Python.

    Python
    View on GitHub↗338
  • biodatageeks/polars-biobiodatageeks avatar

    biodatageeks/polars-bio

    168View on GitHub↗

    Blazing-Fast Bioinformatic Operations on Python DataFrames

    Python
    View on GitHub↗168
Compare all 10 related projects→

Frequently asked questions

What does arq5x/cyvcf do?

A fast Python library for VCF files leveraging Cython for speed.

What are the main features of arq5x/cyvcf?

The main features of arq5x/cyvcf are: Python Bioinformatics Modules.

Which projects share features with arq5x/cyvcf?

Projects with overlapping indexed features include: biodatageeks/polars-bio — Blazing-Fast Bioinformatic Operations on Python DataFrames. brentp/cruzdb — python access to UCSC genomes database. brentp/cyvcf2 — cython + htslib == fast VCF and BCF processing. cokelaer/bioservices — Access to Biological Web Services from Python. daler/pybedtools — Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic"). jamescasbon/pyvcf — A Variant Call Format reader for Python.