Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
De novo assembler for single molecule sequencing reads using repeat graphs
A versatile pairwise aligner for genomic and spliced nucleotide sequences
SKESA assembler
The main features of ncbi/skesa are: Genome Assembly.
Open-source alternatives to ncbi/skesa include: ablab/spades — SPAdes Genome Assembler. chhylp123/hifiasm — Hifiasm: a haplotype-resolved assembler for accurate Hifi reads. fenderglass/flye — De novo assembler for single molecule sequencing reads using repeat graphs. lh3/minimap2 — A versatile pairwise aligner for genomic and spliced nucleotide sequences. marbl/canu — A single molecule sequence assembler for genomes large and small. ruanjue/wtdbg2 — Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly.
