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ablab avatar

ablab/spades

0
View on GitHub↗
943 stars·162 forks·C++·0 viewsablab.github.io/spades↗

Spades

SPAdes Genome Assembler

Features

  • Genome Assembly - Standard toolkit for prokaryotic genome assembly pipelines.

Star history

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Open-source alternatives to Spades

Similar open-source projects, ranked by how many features they share with Spades.
  • chhylp123/hifiasmchhylp123 avatar

    chhylp123/hifiasm

    783View on GitHub↗

    Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

    C++
    View on GitHub↗783
  • fenderglass/flyefenderglass avatar

    fenderglass/Flye

    939View on GitHub↗

    De novo assembler for single molecule sequencing reads using repeat graphs

    C
    View on GitHub↗939
  • lh3/minimap2lh3 avatar

    lh3/minimap2

    2,202View on GitHub↗

    A versatile pairwise aligner for genomic and spliced nucleotide sequences

    C
    View on GitHub↗2,202
  • marbl/canumarbl avatar

    marbl/canu

    701View on GitHub↗

    A single molecule sequence assembler for genomes large and small.

    C++
    View on GitHub↗701
See all 6 alternatives to Spades→

Frequently asked questions

What does ablab/spades do?

SPAdes Genome Assembler

What are the main features of ablab/spades?

The main features of ablab/spades are: Genome Assembly.

What are some open-source alternatives to ablab/spades?

Open-source alternatives to ablab/spades include: chhylp123/hifiasm — Hifiasm: a haplotype-resolved assembler for accurate Hifi reads. fenderglass/flye — De novo assembler for single molecule sequencing reads using repeat graphs. lh3/minimap2 — A versatile pairwise aligner for genomic and spliced nucleotide sequences. marbl/canu — A single molecule sequence assembler for genomes large and small. ncbi/skesa — SKESA assembler. ruanjue/wtdbg2 — Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly.