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luntergroup avatar

luntergroup/octopus

0
View on GitHub↗
324 stars·37 forks·C++·MIT·2 views

Octopus

Bayesian haplotype-based mutation calling

Features

  • Genomic Variant Analysis - Performs Bayesian haplotype-based mutation calling.
  • Variant Calling - Polymorphic Bayesian genotyping model.

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Open-source alternatives to Octopus

Similar open-source projects, ranked by how many features they share with Octopus.
  • arq5x/lumpy-svarq5x avatar

    arq5x/lumpy-sv

    343View on GitHub↗

    lumpy: a general probabilistic framework for structural variant discovery

    C
    View on GitHub↗343
  • ataudt/aneufinderA

    ataudt/aneufinder

    0View on GitHub↗
    View on GitHub↗0
  • brentp/smoovebrentp avatar

    brentp/smoove

    266View on GitHub↗

    structural variant calling and genotyping with existing tools, but, smoothly.

    Go
    View on GitHub↗266
  • antoniodefalco/scevanA

    AntonioDeFalco/SCEVAN

    0View on GitHub↗
    View on GitHub↗0
See all 23 alternatives to Octopus→

Frequently asked questions

What does luntergroup/octopus do?

Bayesian haplotype-based mutation calling

What are the main features of luntergroup/octopus?

The main features of luntergroup/octopus are: Genomic Variant Analysis, Variant Calling.

What are some open-source alternatives to luntergroup/octopus?

Open-source alternatives to luntergroup/octopus include: arq5x/lumpy-sv — lumpy: a general probabilistic framework for structural variant discovery. ataudt/aneufinder. brentp/smoove — structural variant calling and genotyping with existing tools, but, smoothly. broadgsa/gatk — Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the… broadinstitute/infercnv. antoniodefalco/scevan.