Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk repository
DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
Bayesian haplotype-based genetic polymorphism discovery and genotyping.
structural variant calling and genotyping with existing tools, but, smoothly.