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jamescasbon avatar

jamescasbon/PyVCFFork

0
View on GitHub↗
419 stars·196 forks·Python·1 viewpyvcf.readthedocs.org/en/latest/index.html↗

PyVCF

A Variant Call Format reader for Python.

Features

  • Python Bioinformatics Modules - VCF parser for Python.

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Frequently asked questions

What does jamescasbon/pyvcf do?

A Variant Call Format reader for Python.

What are the main features of jamescasbon/pyvcf?

The main features of jamescasbon/pyvcf are: Python Bioinformatics Modules.

What are some open-source alternatives to jamescasbon/pyvcf?

Open-source alternatives to jamescasbon/pyvcf include: arq5x/cyvcf — A fast Python library for VCF files leveraging Cython for speed. biodatageeks/polars-bio — Blazing-Fast Bioinformatic Operations on Python DataFrames. brentp/cruzdb — python access to UCSC genomes database. brentp/cyvcf2 — cython + htslib == fast VCF and BCF processing. cokelaer/bioservices — Access to Biological Web Services from Python. daler/pybedtools — Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic").

Open-source alternatives to PyVCF

Similar open-source projects, ranked by how many features they share with PyVCF.
  • biodatageeks/polars-biobiodatageeks avatar

    biodatageeks/polars-bio

    168View on GitHub↗

    Blazing-Fast Bioinformatic Operations on Python DataFrames

    Python
    View on GitHub↗168
  • brentp/cruzdbbrentp avatar

    brentp/cruzdb

    137View on GitHub↗

    python access to UCSC genomes database

    Python
    View on GitHub↗137
  • brentp/cyvcf2brentp avatar

    brentp/cyvcf2

    445View on GitHub↗

    cython htslib == fast VCF and BCF processing

    Cython
    View on GitHub↗445
  • arq5x/cyvcfarq5x avatar

    arq5x/cyvcf

    53View on GitHub↗

    A fast Python library for VCF files leveraging Cython for speed.

    Python
    View on GitHub↗53
See all 10 alternatives to PyVCF→