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jamescasbon avatar

jamescasbon/PyVCFFork

0
View on GitHub↗
419 stars·196 forks·Python·7 viewspyvcf.readthedocs.org/en/latest/index.html↗

PyVCF

A Variant Call Format reader for Python.

Features

  • Python Bioinformatics Modules - VCF parser for Python.

Star history

Star history chart for jamescasbon/pyvcfStar history chart for jamescasbon/pyvcf

How this analysis was created: This summary and feature list are AI-generated from collected project material and can contain mistakes. Stars, license and language are imported from GitHub. Inclusion does not mean that we have tested or audited this project. Check the source documentation for any feature you depend on. Learn more on our About page.

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Frequently asked questions

What does jamescasbon/pyvcf do?

A Variant Call Format reader for Python.

What are the main features of jamescasbon/pyvcf?

The main features of jamescasbon/pyvcf are: Python Bioinformatics Modules.

Which projects share features with jamescasbon/pyvcf?

Projects with overlapping indexed features include: arq5x/cyvcf — A fast Python library for VCF files leveraging Cython for speed. biodatageeks/polars-bio — Blazing-Fast Bioinformatic Operations on Python DataFrames. brentp/cruzdb — python access to UCSC genomes database. brentp/cyvcf2 — cython + htslib == fast VCF and BCF processing. cokelaer/bioservices — Access to Biological Web Services from Python. daler/pybedtools — Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic").

Projects sharing features with PyVCF

These projects share indexed features with PyVCF. Shared tags can include platform or build tooling; verify the primary use case before treating a result as a replacement.
  • biodatageeks/polars-biobiodatageeks avatar

    biodatageeks/polars-bio

    168View on GitHub↗

    Blazing-Fast Bioinformatic Operations on Python DataFrames

    Python
    View on GitHub↗168
  • brentp/cruzdbbrentp avatar

    brentp/cruzdb

    137View on GitHub↗

    python access to UCSC genomes database

    Python
    View on GitHub↗137
  • brentp/cyvcf2brentp avatar

    brentp/cyvcf2

    445View on GitHub↗

    cython htslib == fast VCF and BCF processing

    Cython
    View on GitHub↗445
  • arq5x/cyvcfarq5x avatar

    arq5x/cyvcf

    53View on GitHub↗

    A fast Python library for VCF files leveraging Cython for speed.

    Python
    View on GitHub↗53
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