evo2 is a genomic large language model and foundation model designed to predict, generate, and analyze genetic information across different species. It functions as a nucleotide sequence modeler and a DNA sequence generator, using transformer-based sequence modeling to process genomic data. The system provides capabilities for synthetic DNA generation, creating new genetic sequences based on biological prompts or species-specific tags. It also performs nucleotide likelihood prediction to score genomic variants and analyze biological properties within DNA sequences. The model supports genomic
Biopython is a bioinformatics library for Python providing tools to parse, manipulate, and analyze biological sequences, molecular structures, and phylogenetic trees. It serves as a biological sequence parser for genomic and proteomic data across multiple industry-standard file formats and acts as an interface for querying biological data and citations from NCBI Entrez repositories. The project distinguishes itself through specialized toolkits for protein structure analysis and phylogenetic tree construction. It includes a protein structure analyzer for processing PDB and mmCIF files to calcu
Cloud-native genomic dataframes and batch computing
Scalable gVCF merging and joint variant calling for population sequencing projects
The main features of dnanexus-rnd/glnexus are: Genomic Data Analysis.
Open-source alternatives to dnanexus-rnd/glnexus include: arcinstitute/evo2 — evo2 is a genomic large language model and foundation model designed to predict, generate, and analyze genetic… biopython/biopython — Biopython is a bioinformatics library for Python providing tools to parse, manipulate, and analyze biological… hail-is/hail — Cloud-native genomic dataframes and batch computing.