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snakemake avatar

snakemake/snakemake

0
View on GitHub↗
2,817 stars·653 forks·Python·MIT·14 viewssnakemake.github.io↗

Snakemake

This is the development home of the workflow management system Snakemake. For general information, see

Features

  • Data Pipelines - Manages scalable and reproducible data analysis workflows.
  • Workflow Automation - Python-based workflow management for reproducible pipelines.
  • General Purpose Orchestration - Python-based system for reproducible and scalable data analyses.

Star history

Star history chart for snakemake/snakemakeStar history chart for snakemake/snakemake

How this analysis was created: This summary and feature list were written by an AI model that read the project's README and public documentation pages. Each feature links to the documentation it came from; stars, license and language come straight from the GitHub API. The model does not read the source code, and the analysis is refreshed when the project is re-analysed. Learn more on our About page.

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Frequently asked questions

What does snakemake/snakemake do?

This is the development home of the workflow management system Snakemake. For general information, see

What are the main features of snakemake/snakemake?

The main features of snakemake/snakemake are: Data Pipelines, Workflow Automation, General Purpose Orchestration.

What are some open-source alternatives to snakemake/snakemake?

Open-source alternatives to snakemake/snakemake include: couler-proj/couler — Unified Interface for Constructing and Managing Workflows on different workflow engines, such as Argo Workflows,… dagster-io/dagster — Dagster is a data orchestration platform designed to manage the entire lifecycle of data assets through declarative… apache/oozie — Mirror of Apache Oozie. argoproj/argo-workflows — Argo Workflows is a container-native workflow engine that functions as a Kubernetes custom resource controller. It… activepieces/activepieces — Activepieces is an open-source, self-hosted workflow automation platform designed to connect third-party applications… huginn/huginn — Huginn is a self-hosted automation platform that functions as an event-driven workflow engine. It allows users to…

Open-source alternatives to Snakemake

Similar open-source projects, ranked by how many features they share with Snakemake.
  • argoproj/argo-workflowsargoproj avatar

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    Argo Workflows is a container-native workflow engine that functions as a Kubernetes custom resource controller. It orchestrates complex sequences of containerized tasks by executing them as directed acyclic graphs, allowing for dependency management and parallel processing within a cluster. The system extends the native Kubernetes control plane to manage the full lifecycle of automated processes, from initial triggering to final resource cleanup. The platform distinguishes itself through its controller-pattern reconciliation, which continuously monitors workflow states to align them with desi

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  • activepieces/activepiecesactivepieces avatar

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    Activepieces is an open-source, self-hosted workflow automation platform designed to connect third-party applications through modular triggers and actions. It provides a low-code integration framework that allows users to build, manage, and execute complex business logic sequences within isolated, sandboxed environments. The platform distinguishes itself through its focus on embeddability and enterprise-grade security. It features an embedded automation builder that can be integrated into external applications via iframes, supported by comprehensive identity and access management tools such a

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  • apache/oozieapache avatar

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    Mirror of Apache Oozie

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    View on GitHub↗729
  • couler-proj/coulercouler-proj avatar

    couler-proj/couler

    944View on GitHub↗

    Unified Interface for Constructing and Managing Workflows on different workflow engines, such as Argo Workflows, Tekton Pipelines, and Apache Airflow.

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    View on GitHub↗944
  • See all 30 alternatives to Snakemake→