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Back to cellprofiler/cellprofiler

Open-source alternatives to CellProfiler

30 open-source projects similar to cellprofiler/cellprofiler, ranked by how many features they have in common. Compare stars, activity and what each one does to find the best CellProfiler alternative.

  • 3b1b/manim3b1b avatar

    3b1b/manim

    87,664View on GitHub↗

    Manim is a Python-based computational geometry framework designed for programmatic video production. It functions as a mathematical animation engine, allowing users to generate high-fidelity visual content by scripting scene definitions rather than using traditional timeline-based editing software. The library is built to translate code-based instructions into precise, frame-accurate animations, making it a tool for explaining complex mathematical functions, geometric proofs, and abstract theories. The engine distinguishes itself through a declarative scene graph that organizes visual element

    Python3b1b-videosanimationexplanatory-math-videos
    View on GitHub↗87,664
  • achaiah/pywickachaiah avatar

    achaiah/pywick

    400View on GitHub↗

    High-level batteries-included neural network training library for Pytorch

    Python
    View on GitHub↗400
  • ailab-cvc/yolo-worldAILab-CVC avatar

    AILab-CVC/YOLO-World

    6,425View on GitHub↗

    YOLO-World is a vision-language framework and open-vocabulary object detection model. It identifies objects in images and video based on free-form text prompts without requiring predefined category labels. The system enables the identification of arbitrary objects by fusing image features with text embeddings. It includes a specialized tool for automated image labeling, which generates bounding box annotations for custom datasets using text-based prompts. The project provides a deployment pipeline for converting models into quantized ONNX and TFLite formats, supporting real-time inference on

    Python
    View on GitHub↗6,425
  • airctic/icevisionA

    airctic/icevision

    0View on GitHub↗
    View on GitHub↗0

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  • alankbi/detectoalankbi avatar

    alankbi/detecto

    626View on GitHub↗

    Build fully-functioning computer vision models with PyTorch

    Python
    View on GitHub↗626
  • albu/albumentationsalbu avatar

    albu/albumentations

    15,308View on GitHub↗

    Albumentations is an image augmentation library and computer vision preprocessing tool designed to expand datasets for deep learning models. It provides a collection of transformations that modify pixel values and spatial geometry to increase the diversity of training samples and improve model generalization. The library supports both 2D image augmentation and 3D volumetric data augmentation. It handles a variety of labels alongside images, ensuring that bounding boxes, keypoints, and segmentation masks remain accurately aligned when spatial transformations are applied. The tool incorporates

    Python
    View on GitHub↗15,308
  • albumentations-team/albumentationsalbumentations-team avatar

    albumentations-team/albumentations

    15,308View on GitHub↗

    Albumentations is a computer vision image augmentation library designed to increase training data diversity for deep learning models. It provides a toolset for applying geometric and color transformations to images and annotations, including a specialized collection of 3D operations for volumetric data used in medical and scientific imaging. The library functions as an image mask and bounding box transformer, automatically updating masks, bounding boxes, and keypoints when images undergo geometric changes. This ensures that spatial alterations remain synchronized across images and their assoc

    Python
    View on GitHub↗15,308
  • aleju/imgaugaleju avatar

    aleju/imgaug

    14,742View on GitHub↗

    imgaug is a Python library for machine learning data augmentation and computer vision dataset expansion. It provides tools to increase the volume and variety of training sets by applying random geometric, color, and noise transformations to images. The library ensures spatial consistency by synchronizing transformations across images and their associated annotations, such as bounding boxes, keypoints, and segmentation maps. It uses a compositional pipeline pattern to chain multiple augmentations into sequences and employs deterministic seed management to reproduce specific data samples. The

    Python
    View on GitHub↗14,742
  • alexeyab/darknetAlexeyAB avatar

    AlexeyAB/darknet

    22,159View on GitHub↗

    Darknet is a high-performance C-based inference engine and computer vision library designed for real-time object identification and localization. It serves as a neural network framework for training and deploying detection models using the YOLO architecture, providing a toolset for deep learning training and deployment. The project differentiates itself through a C and CUDA implementation that enables hardware acceleration for matrix multiplication and inference speed optimization. It provides a shared library interface for embedding detection capabilities into external applications and suppo

    C
    View on GitHub↗22,159
  • alexis-jacq/pytorch-tutorialsA

    alexis-jacq/Pytorch-Tutorials

    0View on GitHub↗
    View on GitHub↗0
  • alibaba/easycvalibaba avatar

    alibaba/EasyCV

    1,950View on GitHub↗

    An all-in-one toolkit for computer vision

    Pythonclassificationcomputer-visionobject-detection
    View on GitHub↗1,950
  • alicevision/alicevisionalicevision avatar

    alicevision/AliceVision

    3,445View on GitHub↗

    3D Computer Vision Framework

    C++
    View on GitHub↗3,445
  • alicevision/meshroomalicevision avatar

    alicevision/Meshroom

    12,562View on GitHub↗

    Meshroom is a node-based photogrammetry software designed to transform collections of two-dimensional images into three-dimensional models and scene geometry. It provides a visual interface for constructing and managing modular data pipelines, allowing users to automate complex computer vision tasks such as feature extraction, depth map estimation, and mesh generation. The software distinguishes itself through a distributed computational framework that dispatches resource-intensive tasks across local hardware or remote render farms. By utilizing a directed acyclic graph execution model, it en

    QML3d-reconstructionalicevisioncamera-tracking
    View on GitHub↗12,562
  • alirezashamsoshoara/fire-detection-uav-aerial-image-classification-segmentation-unmannedaerialvehicleAlirezaShamsoshoara avatar

    AlirezaShamsoshoara/Fire-Detection-UAV-Aerial-Image-Classification-Segmentation-UnmannedAerialVehicle

    251View on GitHub↗

    FLAME (Fire Luminosity Airborne-based Machine learning Evaluation) Dataset

    Python
    View on GitHub↗251
  • amdegroot/ssd.pytorchamdegroot avatar

    amdegroot/ssd.pytorch

    5,224View on GitHub↗

    This is a PyTorch object detection framework that implements the Single Shot MultiBox Detector for identifying and localizing multiple objects within images and video. The project provides a neural network architecture designed for single-shot object detection, which predicts bounding boxes and class labels in one pass. The implementation includes a real-time object detector capable of processing live video streams to track and label objects across sequential frames. It also features a complete computer vision training pipeline for preparing image datasets and training model weights. The fra

    Pythoncomputer-visiondeep-learningimage-recognition
    View on GitHub↗5,224
  • antoniogarrote/clj-tesseractantoniogarrote avatar

    antoniogarrote/clj-tesseract

    55View on GitHub↗

    Clojure wrapper for the Tesseract OCR software

    C++
    View on GitHub↗55
  • arraiyopensource/korniaA

    arraiyopensource/kornia

    0View on GitHub↗
    View on GitHub↗0
  • artisan-roaster-scope/artisanartisan-roaster-scope avatar

    artisan-roaster-scope/artisan

    1,191View on GitHub↗

    artisan: the world's most trusted roasting software

    Python
    View on GitHub↗1,191
  • bactopia/bactopiabactopia avatar

    bactopia/bactopia

    518View on GitHub↗

    A flexible pipeline for complete analysis of bacterial genomes

    Nextflow
    View on GitHub↗518
  • balavenkatesh3322/cv-pretrained-modelbalavenkatesh3322 avatar

    balavenkatesh3322/CV-pretrained-model

    1,360View on GitHub↗

    A collection of computer vision pre-trained models.

    awesome-listcomputer-visiondata-science
    View on GitHub↗1,360
  • bengxy/fastneuralstylebengxy avatar

    bengxy/FastNeuralStyle

    81View on GitHub↗

    Fast Neural Style for Image Style Transform by Pytorch

    Python
    View on GitHub↗81
  • biolab/orange3biolab avatar

    biolab/orange3

    5,635View on GitHub↗

    Orange3 is a visual data mining platform that provides an interactive canvas for building data analysis workflows without writing code. At its core, it offers a widget-based visual programming environment where users connect configurable components to perform data preprocessing, machine learning model training, statistical evaluation, and interactive visualization. The platform is built on NumPy-backed data tables with domain descriptors that define variable names, types, and roles, and includes a lazy SQL query proxy for working with database tables without loading all data into memory. The

    Python
    View on GitHub↗5,635
  • bodenmillergroup/imcworkflowB

    BodenmillerGroup/IMCWorkflow

    0View on GitHub↗
    View on GitHub↗0
  • bodokaiser/piwiseB

    bodokaiser/piwise

    0View on GitHub↗

    Pixel-wise segmentation on the VOC2012dataset dataset using pytorchpytorch.

    View on GitHub↗0
  • call-for-code/droneaidCall-for-Code avatar

    Call-for-Code/DroneAid

    141View on GitHub↗

    DroneAid uses machine learning to detect calls for help on the ground placed by those in need. At the heart of DroneAid is a Symbol Language that is used to train a visual recognition model. That model analyzes video from a drone to detect and count specific images. A dashboard can be used to…

    HTML
    View on GitHub↗141
  • catalyst-team/detectioncatalyst-team avatar

    catalyst-team/detection

    12View on GitHub↗

    Catalyst.Detection

    Python
    View on GitHub↗12
  • catalyst-team/segmentationcatalyst-team avatar

    catalyst-team/segmentation

    28View on GitHub↗

    Catalyst.Segmentation

    Python
    View on GitHub↗28
  • cellprofiler/cellprofiler-analystC

    CellProfiler/CellProfiler-Analyst

    0View on GitHub↗
    View on GitHub↗0
  • chanzuckerberg/cellxgenechanzuckerberg avatar

    chanzuckerberg/cellxgene

    776View on GitHub↗

    An interactive explorer for single-cell transcriptomics data

    JavaScript
    View on GitHub↗776
  • 1adrianb/face-alignment1adrianb avatar

    1adrianb/face-alignment

    7,518View on GitHub↗

    This is a PyTorch-based computer vision library for detecting 2D and 3D facial landmark coordinates. It functions as a facial landmark detector and reconstruction tool, utilizing deep learning to identify precise geometric points on human faces from image datasets. The library allows for the selection of specific detection backends to balance accuracy and processing speed. It supports the integration of precomputed bounding box files, which enables the system to bypass the initial detection phase and proceed directly to landmark extraction. The toolkit includes capabilities for batch image p

    Python
    View on GitHub↗7,518