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Back to seqware/seqware

Open-source alternatives to Seqware

9 open-source projects similar to seqware/seqware, ranked by how many features they have in common. Compare stars, activity and what each one does to find the best Seqware alternative.

  • broadinstitute/cromwellAvatar de broadinstitute

    broadinstitute/cromwell

    1,069Ver en GitHub↗

    Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

    Scala
    Ver en GitHub↗1,069
  • broadinstitute/wdlAvatar de broadinstitute

    broadinstitute/wdl

    27Ver en GitHub↗

    Workflow Description Language - Specification and Implementations

    Java
    Ver en GitHub↗27
  • cgat-developers/ruffusAvatar de cgat-developers

    cgat-developers/ruffus

    175Ver en GitHub↗

    CGAT-ruffus is a lightweight python module for running computational pipelines

    Python
    Ver en GitHub↗175
  • common-workflow-language/common-workflow-languageAvatar de common-workflow-language

    common-workflow-language/common-workflow-language

    1,480Ver en GitHub↗

    Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊

    Common Workflow Language
    Ver en GitHub↗1,480
  • insitro/redunAvatar de insitro

    insitro/redun

    591Ver en GitHub↗

    Yet another redundant workflow engine

    Python
    Ver en GitHub↗591

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nextflow-io/nextflowAvatar de nextflow-io

nextflow-io/nextflow

3,305Ver en GitHub↗

Nextflow is a dataflow workflow engine and distributed computing framework used to build and execute data-intensive pipelines. It serves as a scientific workflow language that allows users to define reproducible data processing sequences, supporting any scripting language through shebang declarations. The system functions as a containerized pipeline orchestrator, utilizing container technologies to ensure software dependencies remain consistent across different environments. It decouples workflow logic from the underlying infrastructure, enabling the same pipeline to run on local machines, cl

Groovyawsbioinformaticscloud
Ver en GitHub↗3,305
  • pcingola/bigdatascriptAvatar de pcingola

    pcingola/BigDataScript

    92Ver en GitHub↗

    BigDataScript: Scirpting language for big data

    Shell
    Ver en GitHub↗92
  • scipipe/scipipeAvatar de scipipe

    scipipe/scipipe

    1,112Ver en GitHub↗

    Robust, flexible and resource-efficient pipelines using Go and the commandline

    Go
    Ver en GitHub↗1,112
  • ssadedin/bpipeAvatar de ssadedin

    ssadedin/bpipe

    242Ver en GitHub↗

    Bpipe - a tool for running and managing bioinformatics pipelines

    Groovy
    Ver en GitHub↗242