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Back to seqware/seqware

Open-source alternatives to Seqware

9 open-source projects similar to seqware/seqware, ranked by how many features they have in common. Compare stars, activity and what each one does to find the best Seqware alternative.

  • broadinstitute/cromwellAvatar von broadinstitute

    broadinstitute/cromwell

    1,069Auf GitHub ansehen↗

    Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

    Scala
    Auf GitHub ansehen↗1,069
  • broadinstitute/wdlAvatar von broadinstitute

    broadinstitute/wdl

    27Auf GitHub ansehen↗

    Workflow Description Language - Specification and Implementations

    Java
    Auf GitHub ansehen↗27
  • cgat-developers/ruffusAvatar von cgat-developers

    cgat-developers/ruffus

    175Auf GitHub ansehen↗

    CGAT-ruffus is a lightweight python module for running computational pipelines

    Python
    Auf GitHub ansehen↗175
  • common-workflow-language/common-workflow-languageAvatar von common-workflow-language

    common-workflow-language/common-workflow-language

    1,480Auf GitHub ansehen↗

    Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊

    Common Workflow Language
    Auf GitHub ansehen↗1,480
  • insitro/redunAvatar von insitro

    insitro/redun

    591Auf GitHub ansehen↗

    Yet another redundant workflow engine

    Python
    Auf GitHub ansehen↗591

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nextflow-io/nextflowAvatar von nextflow-io

nextflow-io/nextflow

3,305Auf GitHub ansehen↗

Nextflow is a dataflow workflow engine and distributed computing framework used to build and execute data-intensive pipelines. It serves as a scientific workflow language that allows users to define reproducible data processing sequences, supporting any scripting language through shebang declarations. The system functions as a containerized pipeline orchestrator, utilizing container technologies to ensure software dependencies remain consistent across different environments. It decouples workflow logic from the underlying infrastructure, enabling the same pipeline to run on local machines, cl

Groovyawsbioinformaticscloud
Auf GitHub ansehen↗3,305
  • pcingola/bigdatascriptAvatar von pcingola

    pcingola/BigDataScript

    92Auf GitHub ansehen↗

    BigDataScript: Scirpting language for big data

    Shell
    Auf GitHub ansehen↗92
  • scipipe/scipipeAvatar von scipipe

    scipipe/scipipe

    1,112Auf GitHub ansehen↗

    Robust, flexible and resource-efficient pipelines using Go and the commandline

    Go
    Auf GitHub ansehen↗1,112
  • ssadedin/bpipeAvatar von ssadedin

    ssadedin/bpipe

    242Auf GitHub ansehen↗

    Bpipe - a tool for running and managing bioinformatics pipelines

    Groovy
    Auf GitHub ansehen↗242