17 个仓库
Awesome GitHub RepositoriesAnalysis Pipelines
Pre-built pipelines for specific genomic analysis tasks.
Explore 17 awesome GitHub repositories matching part of an awesome list · Analysis Pipelines. Refine with filters or upvote what's useful.
Awesome Analysis Pipelines GitHub Repositories
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- qupath/qupath
qupath/qupath
1,388在 GitHub 上查看QuPath - Open-source bioimage analysis for research
Software for digital pathology and image analysis.
Javabioimage-analysisbioimage-informaticscell-analysis - cellprofiler/cellprofiler
CellProfiler/CellProfiler
1,121在 GitHub 上查看An open-source application for biological image analysis
Modular system for building image analysis pipelines.
Python - chapmanb/bcbio-nextgen
chapmanb/bcbio-nextgen
1,030在 GitHub 上查看Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
Comprehensive pipeline for variant and RNA-Seq analysis.
Python - bactopia/bactopia
bactopia/bactopia
518在 GitHub 上查看A flexible pipeline for complete analysis of bacterial genomes
Nextflow-based pipeline for bacterial genome analysis.
Nextflow - pycroscopy/atomai
pycroscopy/atomai
228在 GitHub 上查看AtomAI is a Pytorch-based package for deep and machine learning analysis of microscopy data that doesn't require any advanced knowledge of Python or machine learning. The intended audience is domain scientists with a basic understanding of how to use NumPy and Matplotlib. It was developed by…
Deep learning tools for microscopy analysis.
Python - fmalmeida/bacannot
fmalmeida/bacannot
107在 GitHub 上查看Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.
Bacterial annotation pipeline with graphical reporting.
Nextflow - fmalmeida/ngs-preprocess
fmalmeida/ngs-preprocess
A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
Nextflow pipeline for sequencing read preprocessing.
Nextflow - cellprofiler/cellprofiler-analyst
CellProfiler/CellProfiler-Analyst
Tool for exploring and classifying image analysis results.
- pentalpha/r-peridot
pentalpha/r-peridot
Software for intuitively doing Differential Gene Expression (DGE) analysis on Windows and GNU\Linux, based on R packages.
Customizable pipeline for differential expression analysis.
Java
