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Open-source alternatives to Squiggle
15 open-source projects similar to lab41/squiggle, ranked by how many features they have in common. Compare stars, activity and what each one does to find the best Squiggle alternative.
- scverse/scanpy
scverse/scanpy
2,493Vezi pe GitHubScanpy is a Python library for the preprocessing, visualization, and analysis of large-scale single-cell gene expression datasets. It serves as a toolkit for single-cell RNA sequencing analysis, providing a framework to process and analyze genomic data from individual cells to identify biological markers and cell types. The library includes a scalable data processing pipeline for cleaning and preparing genomic data, a clustering framework for grouping cells with similar expression profiles, and a system for modeling transitions between cell states to reconstruct biological development and dif
Pythonanndatabioinformaticsdata-science - biopython/biopython
biopython/biopython
5,078Vezi pe GitHubBiopython is a bioinformatics library for Python providing tools to parse, manipulate, and analyze biological sequences, molecular structures, and phylogenetic trees. It serves as a biological sequence parser for genomic and proteomic data across multiple industry-standard file formats and acts as an interface for querying biological data and citations from NCBI Entrez repositories. The project distinguishes itself through specialized toolkits for protein structure analysis and phylogenetic tree construction. It includes a protein structure analyzer for processing PDB and mmCIF files to calcu
Pythonbioinformaticsbiopythondna
