Projects sharing features with Scientific Agent Skills

Everything Claude Code is an agentic framework designed to orchestrate complex software development workflows through specialized subagent delegation. It functions as a control plane that manages agent behavior, tool access, and context window efficiency, allowing developers to break down large tasks into focused, scoped sub-processes that prevent system overload. The framework distinguishes itself through a robust security and automation layer that includes automated static analysis and adversarial red-teaming to audit agent configurations. It enables the creation of reusable behavioral patt

This project provides a standardized framework for extending the functional range of artificial intelligence agents through a registry of modular, declarative instructions. It enables agentic workflow automation by allowing developers to define task-specific behaviors and operational constraints that guide how agents interact with external tools and execute multi-step processes. The system distinguishes itself through a directory-based discovery model and a plugin-registry architecture that facilitates the distribution of specialized workflows. By utilizing a schema-driven specification that

This project is an LLM research orchestrator and autonomous AI agent framework designed to automate the scientific lifecycle. It functions as an end-to-end research pipeline and model training toolkit, managing everything from initial literature reviews and hypothesis testing to the final drafting of academic papers. The system is distinguished by its ability to convert unstructured academic PDFs into machine-executable knowledge layers, allowing agents to reproduce and extend research findings. It employs a two-loop orchestration architecture and a specialized research engineering skill libr

dbskill is a collection of specialized libraries comprising prompt specifications, diagnostic frameworks, content toolsets, and agent behavioral instructions. It provides a knowledge management system using a four-layer engineering approach to organize facts and patterns into a verifiable decision-making base, alongside a skill library of prompt templates for business diagnostics and content engineering. The project features a business diagnostic framework for analyzing organizational bottlenecks and optimizing business models through structured analysis. It includes a content engineering too

Scanpy is a Python library for the preprocessing, visualization, and analysis of large-scale single-cell gene expression datasets. It serves as a toolkit for single-cell RNA sequencing analysis, providing a framework to process and analyze genomic data from individual cells to identify biological markers and cell types. The library includes a scalable data processing pipeline for cleaning and preparing genomic data, a clustering framework for grouping cells with similar expression profiles, and a system for modeling transitions between cell states to reconstruct biological development and dif

UFO is a multi-device task orchestrator and LLM agent orchestration framework designed to decompose natural language requests into executable task graphs. It functions as a cross-platform UI automation tool capable of performing interactions on Windows and mobile devices while routing tasks to distributed agents based on their hardware and software capabilities. The system is distinguished by its RAG-enhanced agent architecture, which integrates external documentation and previous execution traces to improve decision-making. It employs a hybrid UI detection approach that combines computer vis

Waterline is an adapter-based database library and object relational mapper for Node.js. It serves as a multi-database persistence layer that translates standard method calls into specific queries for both SQL and NoSQL databases. The library provides a unified interface for managing data across different stores, including MySQL, PostgreSQL, MongoDB, and Microsoft SQL Server. This architecture allows for the integration of multiple database backends within a single application and facilitates database vendor migration by changing adapters without altering business logic. The project covers r

This project is an AI agent integration layer and skill library that connects large language models to external APIs and developer technologies. It functions as a cloud infrastructure automation framework, providing a standardized interface for managing compute, storage, and database resources through automated agent interactions. The system utilizes a skill registry to extend agent capabilities, allowing intelligent agents to interact with cloud platforms and productivity tools. It provides a resource management interface to execute configuration updates and implement standardized security p

This project is a comprehensive AI research workflow framework and skill library designed to transform general large language models into specialized AI research agents. It provides an agentic toolset for academic writing, a knowledge base for AI engineering, and a system for analyzing research artifacts by converting documents and repositories into structured claims and evidence graphs. The framework employs a two-loop orchestration architecture to manage the research lifecycle from ideation and literature surveys to final paper drafting. It distinguishes itself through a modular skill injec

Voyager is an autonomous embodied agent and lifelong learning framework that uses a large language model to explore virtual environments. It functions as a code-based action controller, translating natural language instructions into executable scripts to interact with its surroundings. The system features an automatic curriculum generator that creates sequences of exploration goals to discover new items and behaviors without human intervention. It maintains a skill library manager that stores learned behaviors as reusable code fragments, which can be composed to execute complex tasks. The fr

Multica is an autonomous coding agent manager and LLM agent orchestration platform. It coordinates teams of autonomous agents to execute coding tasks and manage their lifecycles through a centralized dashboard. The system provides multi-tenant agent workspaces that isolate agents, settings, and project issues into distinct organizational boundaries. The platform distinguishes itself through an agent skill library that captures successful task solutions as reusable, versioned skills. These skills are shared across the agent team and pinned using content hashes to ensure consistent behavior acr

Common.Utility is a general purpose utility library providing a collection of helper classes for common programming tasks. It functions as a data security framework, a database access wrapper, and a suite of tools for system administration and network communication. The library includes a multimedia processing suite for generating barcodes and QR codes, editing images, and converting video formats. It also provides a network communication toolkit for managing HTTP requests and FTP transfers, as well as integration with email and notification services. The project covers a broad set of capabi

PraisonAI is an autonomous AI agent platform that coordinates multiple LLM-powered agents for research, planning, and execution of complex workflows. It functions as a multi-agent orchestration framework, a workflow builder, and a Model Context Protocol server, while also providing retrieval-augmented generation through vector knowledge bases. Agents can interact via CLI, web, or standardized protocols with sandboxed code execution. The platform distinguishes itself with a rich set of agent communication protocols, including A2A, REST, WebSocket, voice and telephony integration, and MCP, allo

AutoResearchClaw is an agentic system designed to automate the scientific research process. It functions as an autonomous research agent and workflow automator that manages the entire lifecycle of a project, from initial hypothesis generation and literature review to experimental execution and the production of LaTeX-formatted academic papers. The system distinguishes itself through a multi-agent research pipeline that utilizes structured debates for hypothesis refinement and peer review. It employs a branch-and-merge architecture to explore parallel research directions and integrates human-i

aws-sdk-pandas is a Python library that integrates pandas dataframes with AWS services, acting as a cloud data ETL tool and data lake connector. It provides a unified interface to move and transform data between in-memory dataframes and cloud storage, databases, and data warehouses. The project distinguishes itself as a distributed compute orchestrator capable of submitting pandas-based workloads to EMR clusters and serverless processing environments. It further specializes in coordinating distributed data processing via Ray cluster initialization to handle datasets that exceed the memory of

Paseo is an LLM coding agent orchestrator and multi-agent workflow manager designed to coordinate multiple AI agents across isolated git worktrees. It provides a unified control interface for managing these agents and their associated environments to execute complex programming tasks. The system distinguishes itself through a remote agent daemon that enables secure access to local coding agents via encrypted relays. It employs a git worktree environment manager to isolate parallel tasks into dedicated directories and branch-based server URLs, preventing file collisions and network port confli

This project is a collection of educational notebooks and computational workflows designed for cheminformatics and molecular data science. It provides a structured environment for processing chemical structures, performing scaffold identification, and executing reaction enumeration through standardized data representations. The toolkit distinguishes itself by integrating statistical clustering and visualization techniques to interpret chemical diversity within large datasets. It supports advanced research workflows by enabling structure-activity relationship analysis and the evaluation of pro

Goose is an autonomous coding assistant and extensible AI agent framework designed to automate software development workflows. It functions as an orchestration engine that can install, execute, and test code, as well as manage local files and shell commands. The platform is model-agnostic, providing a flexible interface to connect with diverse cloud-based or self-hosted large language model providers. It distinguishes itself through a standardized context protocol for integrating external tools and extensions, and a recipe system that allows users to define and repeat complex, multi-step AI w

whodb is a multi-database management interface and notebook client designed for exploring and managing data across various engines, including Postgres, MySQL, MongoDB, and Redis. It functions as a graphical interface for managing database connections, records, and schemas through a unified layer. The project features a natural language query interface that uses large language models to translate plain English into executable SQL or NoSQL queries. This is supported by schema-aware prompting that injects database metadata into the model context to ensure generated queries match actual table def

FinRobot is an AI-powered financial analysis framework that coordinates multiple specialized agents to automate equity research, financial analysis, and investment risk assessment. At its core, it functions as a multi-agent orchestration system where a director and task manager allocate financial tasks to the most suitable large language models based on performance metrics and task requirements. The framework distinguishes itself through its ability to execute complex multi-step financial workflows by routing tasks through perception, reasoning, and action modules. It generates professional e

Claude-Code-Workflow is a development workflow engine and command-line orchestration framework that coordinates specialized artificial intelligence agents to automate multi-step software development tasks. The system executes structured processes through natural language command routing, analyzing user intent to select workflows and invoke command-line tools automatically. The platform includes embedded hybrid code search combining full-text and semantic embedding methods over local repositories, along with persistent session management that tracks development steps across multiple execution

Agent Zero is an LLM agent framework and multi-agent orchestrator that provides an AI-powered interface for operating system tasks. It functions as a containerized AI workspace, allowing large language models to interact with a filesystem and terminal within an isolated Linux environment. The system distinguishes itself through a hierarchical orchestration model that decomposes complex goals by spawning specialized sub-agents to collaborate and consolidate results. It features a plugin-based architecture for extending capabilities via a community plugin hub, a custom skills system, and extern

an ambient intelligence library

Bytebot is an LLM desktop automation framework and virtual Linux desktop environment. It enables AI agents to plan and execute mouse and keyboard actions on a virtual computer using natural language, allowing for autonomous desktop automation and the integration of legacy systems that lack native APIs. The system operates as an LLM API gateway and a Model Context Protocol server, routing requests across multiple language model providers with integrated load balancing and rate limiting. It provides isolated, containerized environments where agents use visual reasoning to interpret screenshots

This project is an AI content automation pipeline and LLM agent orchestration framework. It provides a system for generating research-backed text, images, and videos, and scheduling their distribution to social platforms. The framework allows for the development of specialized AI agents and custom tool servers. These servers expose capabilities such as video editing and story generation as API endpoints, enabling agents to execute complex tasks through a combination of AI models and custom tooling. The system covers automated content creation across text, image, and video media, utilizing hu

This project is an AI research tool designed for autonomous web information gathering and automated topic research. It utilizes agent orchestration to combine search engines and web scraping, enabling the system to discover detailed information and build a comprehensive understanding of complex subjects without manual step-by-step guidance. The tool employs an iterative research execution model that recursively generates targeted search queries and refines directions based on previous results. It includes a feedback loop that compares current findings against initial objectives to identify kn

AlphaFold3 is a biomolecular structure prediction model and bioinformatics structural analysis tool. It uses a deep learning system to predict the three-dimensional shapes of proteins, DNA, RNA, and ligands. The system functions as a diffusion-based protein folding model that predicts the spatial coordinates of biomolecular atoms and interactions. It utilizes a GPU-accelerated inference pipeline to process genetic sequences and structural templates for molecular modeling. The project covers structural bioinformatics analysis and protein interaction modeling to determine the physical arrangem