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Back to gersteinlab/biocoder

Open-source alternatives to BioCoder

15 open-source projects similar to gersteinlab/biocoder, ranked by how many features they have in common. Compare stars, activity and what each one does to find the best BioCoder alternative.

  • rllm-org/rllmAvatar rllm-org

    rllm-org/rllm

    5,641Vezi pe GitHub↗

    rllm is an asynchronous reinforcement learning framework for training language agents. It provides a unified pipeline that runs the same agent code for both evaluation and training, automatically capturing traces for gradient computation. The framework supports distributed reinforcement learning across multiple GPUs and nodes using pluggable backends, and executes agents in isolated sandboxes—either locally or in the cloud—for safe and scalable rollout collection. It trains agents built with LangGraph, SmolAgents, OpenAI Agents SDK, or custom frameworks without requiring core logic changes. T

    Pythonagent-frameworkagentic-workflowcoding-agent
    Vezi pe GitHub↗5,641
  • bytedance/fullstackbenchAvatar bytedance

    bytedance/FullStackBench

    121Vezi pe GitHub↗

    FullStack Bench: Evaluating LLMs as Full Stack Coders

    Python
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  • evalplus/evalplusAvatar evalplus

    evalplus/evalplus

    1,765Vezi pe GitHub↗

    Rigourous evaluation of LLM-synthesized code - NeurIPS 2023 & COLM 2024

    Python
    Vezi pe GitHub↗1,765
  • google-research/google-researchAvatar google-research

    google-research/google-research

    38,139Vezi pe GitHub↗

    This repository serves as a comprehensive research platform and toolkit for advancing machine learning, quantum computing, and large-scale scientific data analysis. It provides foundational frameworks for developing complex algorithmic systems, offering the necessary infrastructure for distributed training, computational graph execution, and high-performance model development. The project distinguishes itself by integrating specialized research domains with robust, privacy-preserving methodologies. It supports diverse scientific discovery through tools for quantum simulation, physics-informed

    Jupyter Notebookaimachine-learningresearch
    Vezi pe GitHub↗38,139

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  • hendrycks/appsAvatar hendrycks

    hendrycks/apps

    532Vezi pe GitHub↗

    This is the repository for Measuring Coding Challenge Competence With APPS by Dan Hendrycks\, Steven Basart\, Saurav Kadavath, Mantas Mazeika, Akul Arora, Ethan Guo, Collin Burns, Samir Puranik, Horace He, Dawn Song, and Jacob Steinhardt.

    Python
    Vezi pe GitHub↗532
  • leolty/repobenchAvatar Leolty

    Leolty/repobench

    208Vezi pe GitHub↗

    ✨ RepoBench: Benchmarking Repository-Level Code Auto-Completion Systems - ICLR 2024

    Python
    Vezi pe GitHub↗208
  • livecodebench/livecodebenchAvatar LiveCodeBench

    LiveCodeBench/LiveCodeBench

    890Vezi pe GitHub↗

    Official repository for the paper "LiveCodeBench: Holistic and Contamination Free Evaluation of Large Language Models for Code"

    Python
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  • microsoft/codebertAvatar microsoft

    microsoft/CodeBERT

    2,781Vezi pe GitHub↗

    This repo contains code pretraining models in the CodeBERT series from Microsoft, including six models as of June 2023. - CodeBERT (EMNLP 2020) - GraphCodeBERT (ICLR 2021) - UniXcoder (ACL 2022) - CodeReviewer (ESEC/FSE 2022) - CodeExecutor (ACL 2023) - LongCoder (ICML 2023)

    Python
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  • mrvplusone/coeditorAvatar MrVPlusOne

    MrVPlusOne/Coeditor

    31Vezi pe GitHub↗

    Coeditor is a transformer model that auto-edits your code based on your recent code changes. This repo includes the server code for the Coeditor VSCode extension and the scripts for data processing, model training, and evaluation. The ideas behind Coeditor are presented in the ICLR Spotlight…

    Python
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  • nizarislah/gitchameleonAvatar NizarIslah

    NizarIslah/GitChameleon

    14Vezi pe GitHub↗

    Benchmark associated with the paper "GitChameleon: Unmasking the Version-Switching Capabilities of Code Generation Models"

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    Vezi pe GitHub↗14
  • nuprl/multipl-eN

    nuprl/MultiPL-E

    0Vezi pe GitHub↗

    MultiPL-E is a system for translating unit test-driven neural code generation benchmarks to new languages. We have used MultiPL-E to translate two popular Python benchmarks (HumanEval and MBPP) to 18 other programming languages.

    Vezi pe GitHub↗0
  • open-compass/devbenchAvatar open-compass

    open-compass/DevBench

    131Vezi pe GitHub↗

    👋 Overview | 📖 Benchmarking | ⚙️ Setup | 🚀 Usage | 🔎 Citation | 📄 License

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    Vezi pe GitHub↗131
  • princeton-nlp/swe-benchAvatar princeton-nlp

    princeton-nlp/SWE-bench

    5,263Vezi pe GitHub↗

    SWE-bench is a software engineering benchmark and evaluation framework designed to measure the ability of large language models to resolve real-world GitHub issues. It provides datasets and evaluation suites to verify whether model-generated code patches correctly fix software bugs. The project includes a multimodal benchmark for testing visual language models on issues involving graphical interfaces. It utilizes a collection of pre-processed repository issues and gold-standard patches to train and test AI coding agents. The framework provides infrastructure for containerized patch verificat

    Python
    Vezi pe GitHub↗5,263
  • amazon-science/ccevalAvatar amazon-science

    amazon-science/cceval

    179Vezi pe GitHub↗

    This repository contains the data and inference code of the NeurIPS 2023 (Datasets and Benchmarks track) paper "CrossCodeEval: A Diverse and Multilingual Benchmark for Cross-File Code Completion."

    Python
    Vezi pe GitHub↗179
  • xlang-ai/ds-1000Avatar xlang-ai

    xlang-ai/DS-1000

    273Vezi pe GitHub↗

    Official data and code release for the paper DS-1000: A Natural and Reliable Benchmark for Data Science Code Generation. You can refer to our project page for more examples and baselines.

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