Awesome GitHub RepositoriesSingle Cell Analysis

Standardized toolkit for common single-cell analytical techniques.

Splice-aware aligner for mapping reads to reference genomes.

Quantification of transcript abundances from sequencing data.

Library for programmatic analysis of high-throughput sequencing experiments.

Fast, flexible pipeline for processing RNA-seq data with UMIs.

Integrated tool for quality filtering and iterative dimensionality reduction.

Integrated models for dimensionality reduction and batch effect removal.

Suite for manipulating and error-correcting BUS files.

Matlab-based toolbox for diverse single-cell data analyses.

Rapid preprocessing of single-cell and single-nucleus RNA-seq data.

Comprehensive pipeline for processing and downstream analysis.

Streamlined analysis functions for single-cell statistical workflows.

Analytical framework designed for large-scale single-cell datasets.

End-to-end modular toolkit for comprehensive analysis pipelines.

Efficient, scalable tools for large-scale single-cell data analysis.