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Figure: Comparison of OpenFold and AlphaFold2 predictions to the experimental structure of PDB 7KDX, chain B.
The implementation of DiffAbXL benchmarked in the paper: Benchmarking Generative Models for Antibody Design.
MotifBench is a standardized protein design benchmark for motif-scaffolding problems. The motif-scaffolding problem is a central task in computational protein design: Given the coordinates of atoms in a geometry chosen to confer a desired biochemical function (a motif), the goal is to identify…
One can use the Colab to evaluate our latest models.
PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms. The structures included in PDBench have been chosen to account for the diversity and quality of observed protein structures, giving a more holistic view of performance.
The main features of wells-wood-research/pdbench are: Protein Design Benchmarks.
Projects with overlapping indexed features include: aqlaboratory/openfold — Figure: Comparison of OpenFold and AlphaFold2 predictions to the experimental structure of PDB 7KDX, chain B. astrazeneca/diffabxl — The implementation of DiffAbXL benchmarked in the paper: Benchmarking Generative Models for Antibody Design. blt2114/motifbench — MotifBench is a standardized protein design benchmark for motif-scaffolding problems. The motif-scaffolding problem is… dumbgoos/afd-instruction. hewittlab/systematic-comparison-of-generative-ai-protein-models — Codebase for the paper "Systematic comparison of Generative AI-Protein Models" by Alexander J Barnett, Rajendra KC,… a4bio/proteininvbench — One can use the Colab to evaluate our latest models.