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vcflib avatar

vcflib/vcflib

0
View on GitHub↗
680 stars·221 forks·C++·MIT·6 viewsgithub.com/vcflib/vcflib#vcflib↗

Vcflib

C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings

Features

  • File Utilities - C++ library for parsing and manipulating VCF files.

Star history

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Open-source alternatives to Vcflib

Similar open-source projects, ranked by how many features they share with Vcflib.
  • arq5x/bedtools2arq5x avatar

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    bedtools - the swiss army knife for genome arithmetic

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  • brentp/mosdepthbrentp avatar

    brentp/mosdepth

    859View on GitHub↗

    fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

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  • brentp/somalierbrentp avatar

    brentp/somalier

    322View on GitHub↗

    fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

    Nim
    View on GitHub↗322
  • andersenlab/bam-toolboxAndersenLab avatar

    AndersenLab/bam-toolbox

    1View on GitHub↗

    A bam toolbox

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    View on GitHub↗1
See all 12 alternatives to Vcflib→

Frequently asked questions

What does vcflib/vcflib do?

C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings

What are the main features of vcflib/vcflib?

The main features of vcflib/vcflib are: File Utilities.

What are some open-source alternatives to vcflib/vcflib?

Open-source alternatives to vcflib/vcflib include: andersenlab/bam-toolbox — A bam toolbox. arq5x/bedtools2 — bedtools - the swiss army knife for genome arithmetic. brentp/mosdepth — fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing. brentp/somalier — fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy". brentp/vcfanno — annotate a VCF with other VCFs/BEDs/tabixed files. daler/gffutils — GFF and GTF file manipulation and interconversion.