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swanss avatar

swanss/FragFold

0
View on GitHub↗
44 stars·14 forks·Python·MIT·8 views

FragFold

Scripts for predicting how short fragments of natural proteins bind to full-length proteins, as described in the manuscript. This program is built on top of MMseqs2 and ColabFold, extending them to efficiently predict interactions between a full-length protein and fragments derived from a protein.

Features

  • Structure Prediction Based Design - High-throughput discovery of inhibitory protein fragments.

Star history

Star history chart for swanss/fragfoldStar history chart for swanss/fragfold

How this analysis was created: This summary and feature list are AI-generated from collected project material and can contain mistakes. Stars, license and language are imported from GitHub. Inclusion does not mean that we have tested or audited this project. Check the source documentation for any feature you depend on. Learn more on our About page.

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Projects sharing features with FragFold

These projects share indexed features with FragFold. Shared tags can include platform or build tooling; verify the primary use case before treating a result as a replacement.
  • bene837/af2seqbene837 avatar

    bene837/af2seq

    47View on GitHub↗

    Create a conda enviroment: conda env create -f environment_cpu.yml

    Python
    View on GitHub↗47
  • clareaulab/denovo-cart-reproducibilityC

    clareaulab/denovo-cart-reproducibility

    0View on GitHub↗

    LLab repo for reproducing de novo CAR T manuscript files

    View on GitHub↗0
  • gjoni/trdesigngjoni avatar

    gjoni/trDesign

    183View on GitHub↗

    The package summarizes developments on the use of trRosetta structure prediction network for various protein design applications. We provide core codes for the following papers:

    Jupyter Notebook
    View on GitHub↗183
  • baaihealth/opencomplexbaaihealth avatar

    baaihealth/OpenComplex

    269View on GitHub↗

    OpenComplex is an open-source platform for developing protein and RNA complex models. Based on DeepMind's Alphafold 2 and AQ Laboratory's OpenFold, OpenComplex support almost all features from Alphafold 2 and OpenFold, and introduces the following new features: Reimplemented Alphafold-Multimer…

    Python
    View on GitHub↗269
Compare all 18 related projects→

Frequently asked questions

What does swanss/fragfold do?

Scripts for predicting how short fragments of natural proteins bind to full-length proteins, as described in the manuscript. This program is built on top of MMseqs2 and ColabFold, extending them to efficiently predict interactions between a full-length protein and fragments derived from a protein.

What are the main features of swanss/fragfold?

The main features of swanss/fragfold are: Structure Prediction Based Design.

Which projects share features with swanss/fragfold?

Projects with overlapping indexed features include: bene837/af2seq — Create a conda enviroment: conda env create -f environment_cpu.yml. clareaulab/denovo-cart-reproducibility — LLab repo for reproducing de novo CAR T manuscript files. gjoni/trdesign — The package summarizes developments on the use of trRosetta structure prediction network for various protein design… ibm/afdistill — We propose to apply knowledge distillation to the confidence metrics of the AlphaFold model, such as pTM or pLDDT… jproney/af2rank — Code for the paper "State-of-the-Art Estimation of Protein Model Accuracy using AlphaFold"… baaihealth/opencomplex — OpenComplex is an open-source platform for developing protein and RNA complex models. Based on DeepMind's Alphafold 2…