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Create a conda enviroment: conda env create -f environment_cpu.yml
LLab repo for reproducing de novo CAR T manuscript files
The package summarizes developments on the use of trRosetta structure prediction network for various protein design applications. We provide core codes for the following papers:
OpenComplex is an open-source platform for developing protein and RNA complex models. Based on DeepMind's Alphafold 2 and AQ Laboratory's OpenFold, OpenComplex support almost all features from Alphafold 2 and OpenFold, and introduces the following new features: Reimplemented Alphafold-Multimer…
P(structure | sequence) - TrDesign - using TrRosetta for design - AfDesign - using AlphaFold for design - [WIP] RfDesign - using RoseTTAFold for design - P(sequence | structure) - ProteinMPNN - [WIP] TrMRF - P(sequence) - [WIP] MSA_transformer - [WIP] SEQ - (GREMLIN, mfDCA, arDCA, plmDCA, bmDCA,…
The main features of sokrypton/colabdesign are: Structure Prediction Based Design.
Projects with overlapping indexed features include: bene837/af2seq — Create a conda enviroment: conda env create -f environment_cpu.yml. clareaulab/denovo-cart-reproducibility — LLab repo for reproducing de novo CAR T manuscript files. gjoni/trdesign — The package summarizes developments on the use of trRosetta structure prediction network for various protein design… ibm/afdistill — We propose to apply knowledge distillation to the confidence metrics of the AlphaFold model, such as pTM or pLDDT… jproney/af2rank — Code for the paper "State-of-the-Art Estimation of Protein Model Accuracy using AlphaFold"… baaihealth/opencomplex — OpenComplex is an open-source platform for developing protein and RNA complex models. Based on DeepMind's Alphafold 2…