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Deep probabilistic analysis of single-cell and spatial omics data
The main features of scverse/scvi-tools are: Multi-Omics Integration, Spatial Transcriptomics.
Open-source alternatives to scverse/scvi-tools include: chansigit/torchgw. broadinstitute/tangram. buenrostrolab/figr. cafferychen777/chatspatial — MCP server for spatial transcriptomics analysis through natural language interfaces. cafferychen777/flashdeconv — Fast spatial deconvolution via leverage-score sketching — scales to million-spot datasets while preserving rare cell… biofam/mofa.