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Create a conda enviroment: conda env create -f environment_cpu.yml
LLab repo for reproducing de novo CAR T manuscript files
The package summarizes developments on the use of trRosetta structure prediction network for various protein design applications. We provide core codes for the following papers:
OpenComplex is an open-source platform for developing protein and RNA complex models. Based on DeepMind's Alphafold 2 and AQ Laboratory's OpenFold, OpenComplex support almost all features from Alphafold 2 and OpenFold, and introduces the following new features: Reimplemented Alphafold-Multimer…
In silico directed evolution of peptide binders \ \ EvoBind (v2) designs novel peptide binders based only on a protein target sequence. It is not necessary to specify any target residues within the protein sequence or the length of the binder (although this is possible). Cyclic binder design is…
The main features of patrickbryant1/evobind are: Structure Prediction Based Design.
Projects with overlapping indexed features include: bene837/af2seq — Create a conda enviroment: conda env create -f environment_cpu.yml. clareaulab/denovo-cart-reproducibility — LLab repo for reproducing de novo CAR T manuscript files. gjoni/trdesign — The package summarizes developments on the use of trRosetta structure prediction network for various protein design… ibm/afdistill — We propose to apply knowledge distillation to the confidence metrics of the AlphaFold model, such as pTM or pLDDT… jproney/af2rank — Code for the paper "State-of-the-Art Estimation of Protein Model Accuracy using AlphaFold"… baaihealth/opencomplex — OpenComplex is an open-source platform for developing protein and RNA complex models. Based on DeepMind's Alphafold 2…