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ome/openmicroscopy

0
View on GitHub↗
217 stars·104 forks·Java·GPL-2.0·8 viewswww.openmicroscopy.org/omero↗

Openmicroscopy

OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded by private and public research grants, OME has been a major force on the international microscopy stage since 2000.

Features

  • Medical Imaging Tools - Client-server system for managing and annotating microscope images.

Star history

Star history chart for ome/openmicroscopyStar history chart for ome/openmicroscopy

How this analysis was created: This summary and feature list are AI-generated from collected project material and can contain mistakes. Stars, license and language are imported from GitHub. Inclusion does not mean that we have tested or audited this project. Check the source documentation for any feature you depend on. Learn more on our About page.

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Projects sharing features with Openmicroscopy

These projects share indexed features with Openmicroscopy. Shared tags can include platform or build tooling; verify the primary use case before treating a result as a replacement.
  • mit-lcp/mimic-codeMIT-LCP avatar

    MIT-LCP/mimic-code

    3,135View on GitHub↗

    mimic-code is a clinical data analysis framework and toolset for processing deidentified electronic health records and intensive care unit data. It provides a healthcare SQL query library and a processing tool to transform raw health records into formats suitable for longitudinal analysis and machine learning. The project features a medical research notebook environment that integrates with cloud-hosted datasets, allowing for remote querying and analysis. It includes a DICOM imaging pipeline to retrieve chest radiographs and link medical imaging with structured clinical metadata. The framewo

    Jupyter Notebookcritical-careicumimic-iii
    View on GitHub↗3,135
  • dicomcloud/dicomcloudDICOMcloud avatar

    DICOMcloud/DICOMcloud

    233View on GitHub↗

    Azure friendly DICOMweb part 18 .NET server with qido-rs, wado-rs, stow-rs, wado-uri RESTful implementation

    C#
    View on GitHub↗233
  • hms-dbmi/vivhms-dbmi avatar

    hms-dbmi/viv

    351View on GitHub↗

    Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

    JavaScript
    View on GitHub↗351
  • cornerstonejs/cornerstonecornerstonejs avatar

    cornerstonejs/cornerstone

    2,110View on GitHub↗

    Deprecated Use Cornerstone3D Instead https://cornerstonejs.org/

    JavaScript
    View on GitHub↗2,110
Compare all 13 related projects→

Frequently asked questions

What does ome/openmicroscopy do?

OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded by private and public research grants, OME has been a major force on the international microscopy stage since 2000.

What are the main features of ome/openmicroscopy?

The main features of ome/openmicroscopy are: Medical Imaging Tools.

Which projects share features with ome/openmicroscopy?

Projects with overlapping indexed features include: mit-lcp/mimic-code — mimic-code is a clinical data analysis framework and toolset for processing deidentified electronic health records and… dicomcloud/dicomcloud — Azure friendly DICOMweb part 18 .NET server with qido-rs, wado-rs, stow-rs, wado-uri RESTful implementation. hms-dbmi/viv — Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr… imagingdatacommons/slim — Interoperable web-based DICOM slide microscopy viewer and annotation tool. kaapana/kaapana — Kaapana is an open source toolkit for state of the art platform provisioning in the field of medical data analysis.… cornerstonejs/cornerstone — [Deprecated] Use Cornerstone3D Instead https://cornerstonejs.org/.