awesome-repositories.com
Blog
MCP
awesome-repositories.com

Discover the best open-source repositories with AI-powered search.

ExploreCurated searchesOpen-source alternativesSelf-hosted softwareBlogSitemap
ProjectMCP serverAboutHow we rankPress
LegalPrivacyTerms
© 2026 Bringes Technology SRL·VAT RO45896025·hello@awesome-repositories.com
·
NBISweden avatar

NBISweden/AGAT

0
View on GitHub↗
573 stars·66 forks·HTML·GPL-3.0·4 views

AGAT

Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/

Features

  • File Utilities - Suite for handling GTF and GFF gene annotations.

Star history

Star history chart for nbisweden/agatStar history chart for nbisweden/agat

AI search

Explore more awesome repositories

Describe what you need in plain English — the AI ranks thousands of curated open-source projects by relevance.

Start searching with AI

Open-source alternatives to AGAT

Similar open-source projects, ranked by how many features they share with AGAT.
  • arq5x/bedtools2arq5x avatar

    arq5x/bedtools2

    1,038View on GitHub↗

    bedtools - the swiss army knife for genome arithmetic

    C
    View on GitHub↗1,038
  • brentp/mosdepthbrentp avatar

    brentp/mosdepth

    859View on GitHub↗

    fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

    Nim
    View on GitHub↗859
  • brentp/somalierbrentp avatar

    brentp/somalier

    322View on GitHub↗

    fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

    Nim
    View on GitHub↗322
  • andersenlab/bam-toolboxAndersenLab avatar

    AndersenLab/bam-toolbox

    1View on GitHub↗

    A bam toolbox

    Python
    View on GitHub↗1
See all 12 alternatives to AGAT→

Frequently asked questions

What does nbisweden/agat do?

Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/

What are the main features of nbisweden/agat?

The main features of nbisweden/agat are: File Utilities.

What are some open-source alternatives to nbisweden/agat?

Open-source alternatives to nbisweden/agat include: andersenlab/bam-toolbox — A bam toolbox. arq5x/bedtools2 — bedtools - the swiss army knife for genome arithmetic. brentp/mosdepth — fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing. brentp/somalier — fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy". brentp/vcfanno — annotate a VCF with other VCFs/BEDs/tabixed files. daler/gffutils — GFF and GTF file manipulation and interconversion.