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Figure: Comparison of OpenFold and AlphaFold2 predictions to the experimental structure of PDB 7KDX, chain B.
The implementation of DiffAbXL benchmarked in the paper: Benchmarking Generative Models for Antibody Design.
MotifBench is a standardized protein design benchmark for motif-scaffolding problems. The motif-scaffolding problem is a central task in computational protein design: Given the coordinates of atoms in a geometry chosen to confer a desired biochemical function (a motif), the goal is to identify…
One can use the Colab to evaluate our latest models.
This is the code for AbBiBench (Antibody Binding Benchmarking), a benchmarking framework for optimizing antibody binding affinity. We use experimental antibody–antigen binding affinity measurements to evaluate the performance of widely used computational models for antibody sequence engineering,…
The main features of msbmi-safe/abbibench are: Protein Design Benchmarks.
Open-source alternatives to msbmi-safe/abbibench include: aqlaboratory/openfold — Figure: Comparison of OpenFold and AlphaFold2 predictions to the experimental structure of PDB 7KDX, chain B. astrazeneca/diffabxl — The implementation of DiffAbXL benchmarked in the paper: Benchmarking Generative Models for Antibody Design. blt2114/motifbench — MotifBench is a standardized protein design benchmark for motif-scaffolding problems. The motif-scaffolding problem is… dumbgoos/afd-instruction. hewittlab/systematic-comparison-of-generative-ai-protein-models — Codebase for the paper "Systematic comparison of Generative AI-Protein Models" by Alexander J Barnett, Rajendra KC,… a4bio/proteininvbench — One can use the Colab to evaluate our latest models.