Open-source alternatives to Single Cell Pseudotime

This is a deep learning framework for predicting future values in sequential data using PyTorch architectures. It provides a toolkit for long-horizon and probabilistic time series prediction, incorporating a data pipeline to convert tabular dataframes into sequences for supervised deep learning training. The library utilizes a training wrapper to scale model execution across CPUs and GPUs. It supports the generation of probability distributions for future outcomes instead of single point estimates to quantify prediction uncertainty. The framework includes capabilities for implementing foreca

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Neuralforecast is a neural time series forecasting library designed to predict future values for one or multiple series using deep learning architectures. It functions as a distributed machine learning forecasting framework that enables the training of global models across multiple time series to improve generalization through cross-learning. The project distinguishes itself as a probabilistic forecasting toolkit that produces uncertainty intervals and probability distributions rather than single point estimates. It also includes a hierarchical forecast reconciler to ensure that predictions a

statsforecast is a high-performance statistical time series forecasting library designed to generate point forecasts and prediction intervals. It functions as a distributed time series framework that utilizes a C-based forecasting engine and an automated model selector to identify and fit the optimal statistical model for every unique series in a dataset. The system also includes a time series anomaly detector to identify unusual data points by comparing observed values against probabilistic forecast intervals. The project is distinguished by its ability to handle massive-scale parallel forec

sktime is a machine learning framework for time series analysis. It provides a unified toolkit for implementing time series classification, forecasting, and anomaly detection using standardized machine learning interfaces. The library serves as a collection of tools for assigning categorical labels to temporal sequences, predicting future values based on historical patterns, and identifying outliers or unusual patterns within temporal data. The framework includes capabilities for panel-data handling and pipeline-based transformations. It utilizes a unified API wrapper and plugin-based model

This PyTorch-based deep learning library provides a framework for analyzing and forecasting temporal data. It implements specialized architectures for time series forecasting, anomaly detection, data imputation, and classification. The project distinguishes itself through the inclusion of zero-shot inference capabilities, allowing large-scale temporal models to be evaluated on unseen datasets without requiring task-specific fine-tuning. The framework covers a broad range of analytical capabilities, including the recovery of missing values in incomplete datasets, the identification of irregul

tsai is a deep learning library for time series classification, regression, and forecasting. Built on PyTorch and fastai, it provides a framework for assigning labels to sequential data, predicting future values in univariate or multivariate sequences, and training representations on unlabeled data through self-supervised learning. The library distinguishes itself with specialized temporal engineering and scaling capabilities. It includes tools for cyclical temporal encoding to capture seasonal patterns and online window slicing to process datasets larger than available memory. It also suppor

Darts is a Python time series library designed for forecasting, anomaly detection, and the preprocessing of univariate and multivariate temporal data. It serves as a comprehensive framework for training and evaluating a wide range of statistical, machine learning, and deep learning models to predict future numerical values. The toolkit is distinguished by its support for global time series modeling, allowing a single model to be trained across multiple different series to leverage shared patterns. It also features a hierarchical time series manager to ensure consistency between aggregate and

a Python toolbox for machine learning on Partially-Observed Time Series