A4Bio/PiFold
PiFold
The official implementation of the ICLR'23 paper PiFold: Toward effective and efficient protein inverse folding.
Features
- Graph Neural Networks - Efficient inverse folding using graph neural networks.
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This project is a collection of deep learning research papers translated into annotated code. It serves as a resource for reproducing academic research, providing implementations of transformers, diffusion models, and reinforcement learning architectures. The library distinguishes itself by using a side-by-side annotation format that combines executable Python code with descriptive markdown notes. This approach provides a structured way to explain the logic of neural network papers alongside their PyTorch-based implementations. The codebase covers several major capability areas, including ge
KDD 2022 The implementation for "Condensing Graphs via One-Step Gradient Matching" on graph classification is shown below. For node classification, please refer to link.
A PyTorch implementation of "Predict then Propagate: Graph Neural Networks meet Personalized PageRank" (ICLR 2019).
This is the Pytorch implementation of NeurIPS-23 work: "Structure-free Graph Condensation (SFGC): From Large-scale Graphs to Condensed Graph-free Data".
The official implementation of the ICLR'23 paper PiFold: Toward effective and efficient protein inverse folding.
The main features of a4bio/pifold are: Graph Neural Networks.
Projects with overlapping indexed features include: labmlai/annotated_deep_learning_paper_implementations — This project is a collection of deep learning research papers translated into annotated code. It serves as a resource… amazon-research/doscond — [KDD 2022] The implementation for "Condensing Graphs via One-Step Gradient Matching" on graph classification is shown… benedekrozemberczki/appnp — A PyTorch implementation of "Predict then Propagate: Graph Neural Networks meet Personalized PageRank" (ICLR 2019). benedekrozemberczki/attentionwalk — A PyTorch Implementation of "Watch Your Step: Learning Node Embeddings via Graph Attention" (NeurIPS 2018). benedekrozemberczki/capsgnn — A PyTorch implementation of "Capsule Graph Neural Network" (ICLR 2019). amanda-zheng/sfgc — This is the Pytorch implementation of NeurIPS-23 work: "Structure-free Graph Condensation (SFGC): From Large-scale…