10 open-source projects similar to jwohlwend/boltz, ranked by shared indexed features. Tags may describe platforms or build tools rather than the same primary purpose. Check each project’s use case, license, and deployment requirements before treating it as a replacement.
DeepChem is an open-source Python framework for applying deep learning to molecular, chemical, and biological data, serving as a comprehensive toolkit for drug discovery and materials science. At its core, it provides a featurizer-pipeline abstraction that converts raw molecular data into numerical representations, including graph-based molecular structures, SMILES tokenization vocabularies, and disk-sharded dataset persistence for handling large-scale data that exceeds RAM capacity. The framework distinguishes itself through integrated molecular docking workflows that automate pocket detecti
AlphaFold3 is a biomolecular structure prediction model and bioinformatics structural analysis tool. It uses a deep learning system to predict the three-dimensional shapes of proteins, DNA, RNA, and ligands. The system functions as a diffusion-based protein folding model that predicts the spatial coordinates of biomolecular atoms and interactions. It utilizes a GPU-accelerated inference pipeline to process genetic sequences and structural templates for molecular modeling. The project covers structural bioinformatics analysis and protein interaction modeling to determine the physical arrangem
AlphaFold is a deep learning biology tool and structural bioinformatic pipeline designed to predict the three-dimensional shapes of proteins from their amino acid sequences. It functions as a machine learning system capable of generating 3D molecular models for both monomeric proteins and multimeric protein complexes, including homomers and heteromers. The system incorporates evolutionary information through multiple sequence alignment to identify physical proximity between residues. It utilizes a neural network architecture featuring spatial attention mechanisms and iterative refinement to d
Official repository for DeepAb: Antibody structure prediction using interpretable deep learning. The code, data, and weights for this work are made available under the Rosetta-DL license as part of the Rosetta-DL bundle.
The code for FvHallucinator is made available under the Rosetta-DL license as part of the Rosetta-DL bundle.
BoltzDesign1 is a molecular design tool powered by the Boltz model for designing protein-protein interactions and biomolecular complexes.
This repository presents an approach for ligand discovery for protein bindign pockets, by combining Monte Carlo (MC) simulations with the model Chai-1 (Chai-1 github, Chai-1 technical report). There are two types of simulations presented here: - The basic simulation explores chemical space by…
Structure prediction and design of proteins with noncanonical amino acids.