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Projects sharing features with Boltz

10 open-source projects similar to jwohlwend/boltz, ranked by shared indexed features. Tags may describe platforms or build tools rather than the same primary purpose. Check each project’s use case, license, and deployment requirements before treating it as a replacement.

  • deepchem/deepchemdeepchem avatar

    deepchem/deepchem

    6,545View on GitHub↗

    DeepChem is an open-source Python framework for applying deep learning to molecular, chemical, and biological data, serving as a comprehensive toolkit for drug discovery and materials science. At its core, it provides a featurizer-pipeline abstraction that converts raw molecular data into numerical representations, including graph-based molecular structures, SMILES tokenization vocabularies, and disk-sharded dataset persistence for handling large-scale data that exceeds RAM capacity. The framework distinguishes itself through integrated molecular docking workflows that automate pocket detecti

    Pythonbiologydeep-learningdrug-discovery
    View on GitHub↗6,545
  • google-deepmind/alphafold3google-deepmind avatar

    google-deepmind/alphafold3

    7,613View on GitHub↗

    AlphaFold3 is a biomolecular structure prediction model and bioinformatics structural analysis tool. It uses a deep learning system to predict the three-dimensional shapes of proteins, DNA, RNA, and ligands. The system functions as a diffusion-based protein folding model that predicts the spatial coordinates of biomolecular atoms and interactions. It utilizes a GPU-accelerated inference pipeline to process genetic sequences and structural templates for molecular modeling. The project covers structural bioinformatics analysis and protein interaction modeling to determine the physical arrangem

    Python
    View on GitHub↗7,613
  • google-deepmind/alphafoldgoogle-deepmind avatar

    google-deepmind/alphafold

    14,681View on GitHub↗

    AlphaFold is a deep learning biology tool and structural bioinformatic pipeline designed to predict the three-dimensional shapes of proteins from their amino acid sequences. It functions as a machine learning system capable of generating 3D molecular models for both monomeric proteins and multimeric protein complexes, including homomers and heteromers. The system incorporates evolutionary information through multiple sequence alignment to identify physical proximity between residues. It utilizes a neural network architecture featuring spatial attention mechanisms and iterative refinement to d

    Python
    View on GitHub↗14,681

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  • psipred/dmpfold2psipred avatar

    psipred/DMPfold2

    58View on GitHub↗

    Fast and accurate protein structure prediction

    Python
    View on GitHub↗58
  • rosettacommons/deepabRosettaCommons avatar

    RosettaCommons/DeepAb

    174View on GitHub↗

    Official repository for DeepAb: Antibody structure prediction using interpretable deep learning. The code, data, and weights for this work are made available under the Rosetta-DL license as part of the Rosetta-DL bundle.

    Python
    View on GitHub↗174
  • rosettacommons/fvhallucinatorR

    RosettaCommons/FvHallucinator

    0View on GitHub↗

    The code for FvHallucinator is made available under the Rosetta-DL license as part of the Rosetta-DL bundle.

    View on GitHub↗0
  • tencentai4s/tfoldTencentAI4S avatar

    TencentAI4S/tfold

    159View on GitHub↗

    English | 简体中文

    Python
    View on GitHub↗159
  • yehlincho/boltzdesign1yehlincho avatar

    yehlincho/BoltzDesign1

    256View on GitHub↗

    BoltzDesign1 is a molecular design tool powered by the Boltz model for designing protein-protein interactions and biomolecular complexes.

    Python
    View on GitHub↗256
  • jakobagamia/ai-mcligJ

    JakobAgamia/AI-MCLig

    0View on GitHub↗

    This repository presents an approach for ligand discovery for protein bindign pockets, by combining Monte Carlo (MC) simulations with the model Chai-1 (Chai-1 github, Chai-1 technical report). There are two types of simulations presented here: - The basic simulation explores chemical space by…

    View on GitHub↗0
  • patrickbryant1/rarefoldpatrickbryant1 avatar

    patrickbryant1/RareFold

    138View on GitHub↗

    Structure prediction and design of proteins with noncanonical amino acids.

    Python
    View on GitHub↗138