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Awesome GitHub RepositoriesGenomic Preprocessing Pipelines
Memory-efficient pipelines for cleaning and preparing genomic data for analysis.
Distinct from Genomic Data Analysis: Specifically targets the preprocessing stage of genomic analysis rather than general analysis
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Awesome Genomic Preprocessing Pipelines GitHub Repositories
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- scverse/scanpy
scverse/scanpy
2,493عرض على GitHubScanpy is a Python library for the preprocessing, visualization, and analysis of large-scale single-cell gene expression datasets. It serves as a toolkit for single-cell RNA sequencing analysis, providing a framework to process and analyze genomic data from individual cells to identify biological markers and cell types. The library includes a scalable data processing pipeline for cleaning and preparing genomic data, a clustering framework for grouping cells with similar expression profiles, and a system for modeling transitions between cell states to reconstruct biological development and dif
Provides memory-efficient pipelines for cleaning and preparing large-scale single-cell datasets.
Pythonanndatabioinformaticsdata-science
